View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5189_high_3 (Length: 622)
Name: NF5189_high_3
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_high_3 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 21 - 622
Target Start/End: Original strand, 35681073 - 35681674
Alignment:
| Q |
21 |
atgacaccaatggcagcatagggtttttggctaacagaaaaatgattagagattgtgataagccaaaagcacaaactgatttggcaaaatttcacaacac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35681073 |
atgacaccaatggcagcatagggtttttggctaacagaaaaatgattagagattgtgataagccaaaagcacaaactgatttggcaaaatttcacaacac |
35681172 |
T |
|
| Q |
121 |
atgctcggttgtggtaaaagtctgcgacactgcaactgagagtaatgaagcgctaaatgctgcaaagttgaactttcaagatattataaactctccccta |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35681173 |
atgctcggttgcggtaaaagtctgcgacactgcaactgagagtaatgaagcgctaaatgctgcaaagttgaactttcaagatattataaactctccccta |
35681272 |
T |
|
| Q |
221 |
gatgcgtccgacgtgaagatagacaattttgctgagaaaggtcagtgcttcaatccagaaacagtggctcattggttgcggttgcttcatgatgtggaag |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
35681273 |
gatgcgtccgacgtgaagatagacaattttgctgagaaaggtcagtgcttcaatccagaaacagtgggtcattggttgcggttgcgccatgatgtggaag |
35681372 |
T |
|
| Q |
321 |
aagtaggaagggtacacacaatgggcaaacacaataaatacatttataaggatccatactttgccttcattttcttaaggtgtgatatttttaatctctg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35681373 |
aagtaggaagggtacacacaatgggcaaacacaataaatacatttataaggatccatactttgccttcattttcttaaggtgtgatgtttttaatctctg |
35681472 |
T |
|
| Q |
421 |
caatcctattctgcaacattatcaccttgctgctatcctattagttcagtttcttgagaaacaaaacctccactcatgatcaatattatgcatatcttat |
520 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35681473 |
caatcctattcttcaacattatcaccttgccgctatcctattagttcagtttcttgataaacaaaacctccactcatgatcaatattatgcatattttat |
35681572 |
T |
|
| Q |
521 |
gaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttatt |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35681573 |
gaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttatt |
35681672 |
T |
|
| Q |
621 |
aa |
622 |
Q |
| |
|
|| |
|
|
| T |
35681673 |
aa |
35681674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 466 - 609
Target Start/End: Original strand, 31635407 - 31635550
Alignment:
| Q |
466 |
tcagtttcttgagaaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
565 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
31635407 |
tcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaacc |
31635506 |
T |
|
| Q |
566 |
aagaaacgttagactaagggtactctcaccatttggtgttctgc |
609 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
31635507 |
aagaaacattataccaagggtactctcaccatttggtgttctgc |
31635550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 6e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 98 - 342
Target Start/End: Complemental strand, 32535314 - 32535070
Alignment:
| Q |
98 |
gatttggcaaaatttcacaacacatgctcggttgtggtaaaagtctgcgacactgcaactgagagtaatgaagcgctaaatgctgcaaagttgaactttc |
197 |
Q |
| |
|
|||||||||||| ||| | |||||||||| | || ||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
32535314 |
gatttggcaaaacttcgcgacacatgctccgctgcggtaaaagtctatgacattgcaactgagagtaatgaagcactaaatgctgcagagttgaactttc |
32535215 |
T |
|
| Q |
198 |
aagatattataaactctcccctagatgcgtccgacgtgaagatagacaattttgctgagaaaggtcagtgcttcaatccagaaacagtggctcattggtt |
297 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |
|
|
| T |
32535214 |
cggatattatcaactctcccctagatgcgtccgacgtgaagatagacaattttgctgagaaaggtgagtgcttcaatccagaaacagtagctcattggct |
32535115 |
T |
|
| Q |
298 |
gcggttgcttcatgatgtggaagaagtaggaagggtacacacaat |
342 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
32535114 |
gcggttgtgttatgatgtggaagaagtaggaagggtacacacaat |
32535070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 466 - 609
Target Start/End: Original strand, 4302720 - 4302863
Alignment:
| Q |
466 |
tcagtttcttgagaaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
565 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
4302720 |
tcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaacc |
4302819 |
T |
|
| Q |
566 |
aagaaacgttagactaagggtactctcaccatttggtgttctgc |
609 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4302820 |
aagaaacattatactaagggtactctcaccatttggtgttctgc |
4302863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 455 - 609
Target Start/End: Original strand, 37192603 - 37192761
Alignment:
| Q |
455 |
atcctattagttcagtttcttgagaaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatat |
554 |
Q |
| |
|
||||||||| |||||||||||| ||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37192603 |
atcctattatgtcagtttcttgaaaaacaaagcttctactcttgatcaatattatgcatatcttatgaatgcatttttaagctttattaaaggcttatat |
37192702 |
T |
|
| Q |
555 |
aaagtgggaccaagaaacgttag----actaagggtactctcaccatttggtgttctgc |
609 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
37192703 |
gaagtgggaccaagaaacgttagactaactaagggtactctcaccatttgatgttctgc |
37192761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 342 - 456
Target Start/End: Original strand, 37192119 - 37192233
Alignment:
| Q |
342 |
tgggcaaacacaataaatacatttataaggatccatactttgccttcattttcttaaggtgtgatatttttaatctctgcaatcctattctgcaacatta |
441 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
37192119 |
tggggaaacacaatgaatacatttctaaggatccatcctatgccttcattttcttaaggtgtgatgtttttaatctctgcaatcctattcttcaacatta |
37192218 |
T |
|
| Q |
442 |
tcaccttgctgctat |
456 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37192219 |
tcaccttgctgctat |
37192233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University