View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189_high_6 (Length: 449)
Name: NF5189_high_6
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 12 - 433
Target Start/End: Original strand, 27066258 - 27066679
Alignment:
| Q |
12 |
atcatcaccagaaccagctccatctctgtaattggtgaatttctcttgagcagcaaaacttcctttaccatagttcttgaaagtattctcaggtttgttc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066258 |
atcatcaccagaaccagctccatctctgtaattggtgaatttctcttgagcagcaaaacttcctttaccatagttcttgaaagtattctcaggtttgttc |
27066357 |
T |
|
| Q |
112 |
aaattcttgctatagcttacgaaagcatctacagcgcttgagcctttttctgaatatccagagaaatcagatttgaagacgttagcatttttcgcatact |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066358 |
aaattcttactatagcttacgaaagcatctacagcgcttgagcctttttctgaatatccagagaaatcagatttgaagacgttagcatttttcgcatact |
27066457 |
T |
|
| Q |
212 |
gagtgaaaccgttaactgcgtgaatagagtctttgccgtaacttgcgaaactttggttaccggagttaccaccatcgctgtagcttacgaatgattgttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066458 |
gagtgaaaccgttaactgcgtgaatagagtctttgccgtaacttgcgaaactttggttaccggagttaccaccatcgctgtagcttacgaatgattgttc |
27066557 |
T |
|
| Q |
312 |
tcttccggtcacggaggctgtgtaggtggtgaattttacgttaggaatgttgctttcttcagagtaggctttgaattcaccgaatccagccatggattta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066558 |
tcttccggtcacggaggctgtgtaggtggtgaattttaggttaggaatgttgctttcttcagagtaggctttgaattcaccgaatccagccatggattta |
27066657 |
T |
|
| Q |
412 |
gtgccgtagctgttgaaggttt |
433 |
Q |
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|||||||||||||||||||||| |
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| T |
27066658 |
gtgccgtagctgttgaaggttt |
27066679 |
T |
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