View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189_low_10 (Length: 356)
Name: NF5189_low_10
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 40079356 - 40079052
Alignment:
| Q |
1 |
aggtacacataagagatggaaatggatacatgtaattaaggttagcagcaaacttcgttcctgcaacgtcaacaacataacaaacacatgcatattttta |
100 |
Q |
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| T |
40079356 |
aggtacacataagagatggaaatggatacatgtaattaaggttagcagcaaacttcgttcctgcaacgtcaacaacataacaaacacatgcatattttta |
40079257 |
T |
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| Q |
101 |
taacgaaatgcgtgaaaaattggtaacggtatgcacataaagtgggagttatagcacctatatagaatagaacnnnnnnncttaaataactgataaataa |
200 |
Q |
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| T |
40079256 |
ttacgaaatgcgtgaaaaattggtaacggtatgcacataaaatgggagttaaagcacctatatagaatagaacaaaaaaacttaaataactgataaataa |
40079157 |
T |
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| Q |
201 |
ttgttatgttacaattagacatgtattttgtcaatcttttgttatattcttgcccaacaatgaaaagttggttttttcttcttcaaaataacatgattaa |
300 |
Q |
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| T |
40079156 |
ttgttatgttacaattagacatgtattttgtcaatcttttgttatattcttgcccaacaatgaaaagttggtttcttcttcttcaaaataacatgattaa |
40079057 |
T |
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| Q |
301 |
acatg |
305 |
Q |
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| T |
40079056 |
acatg |
40079052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 40079032 - 40078996
Alignment:
| Q |
315 |
cacaaaaatatgtggtatattattggcctttgcttct |
351 |
Q |
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| T |
40079032 |
cacaaaaatatgtggtatattattggcctttggttct |
40078996 |
T |
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