View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189_low_16 (Length: 248)
Name: NF5189_low_16
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 44248321 - 44248091
Alignment:
| Q |
1 |
ttttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248321 |
ttttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagt |
44248222 |
T |
|
| Q |
101 |
attgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248221 |
attgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccag |
44248122 |
T |
|
| Q |
201 |
atggtcatgcaggagcttatatgaatccttt |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
44248121 |
atggtcatgcaggagcttatatgaatccttt |
44248091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15284239 - 15284469
Alignment:
| Q |
1 |
ttttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15284239 |
ttttgaaggtggttgggataagggtggtacttgttcaaagagagagccatatggaaatgaggagaagaaacttgaaggaatggatgctaagataagaagt |
15284338 |
T |
|
| Q |
101 |
attgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccag |
200 |
Q |
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||||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
15284339 |
gttgagatagaggaagtggaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttgagaccag |
15284438 |
T |
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| Q |
201 |
atggtcatgcaggagcttatatgaatccttt |
231 |
Q |
| |
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|||||||||| || ||||||||||||||||| |
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| T |
15284439 |
atggtcatgctggtgcttatatgaatccttt |
15284469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15287679 - 15287446
Alignment:
| Q |
1 |
ttttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||| | |||| |||| || |||||||||| | ||| ||||||||||| | |||| ||||| |
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| T |
15287679 |
ttttgaaggtgattgggataaggctggtacttgttcaaagactaagccttatagaaaagaggagaagatagttggaggaatggatggtgagattagaagg |
15287580 |
T |
|
| Q |
101 |
attgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaatt-----ggattaaatttggaggtgcttgatataacaaagttggcattattgag |
195 |
Q |
| |
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||||||||||| |||| |||| ||| || ||||||| || ||||| | |||| | || |||||| | ||| |||| || |||||||||||||| |
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| T |
15287579 |
attgagatagaagaagtggaaagtgccaagacaaaagct-aataaatttgaaggtattagaatt-gaggtgttggatgtaactaaattggcattattgag |
15287482 |
T |
|
| Q |
196 |
accagatggtcatgcaggagcttatatgaatccttt |
231 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||| |
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| T |
15287481 |
accagatggtcatccaggtccttacatgaatccttt |
15287446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 15265533 - 15265418
Alignment:
| Q |
1 |
ttttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagt |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||| | ||| |||| | | |||| |||| |||| ||||||||| ||||||||||||||| | |||| |||| |
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| T |
15265533 |
ttttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttatagaaatggagagaagaaagttgaaggaatggatggtgagatgagaaag |
15265434 |
T |
|
| Q |
101 |
attgagatagaggaag |
116 |
Q |
| |
|
||||||||||| |||| |
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| T |
15265433 |
attgagatagaagaag |
15265418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 15262931 - 15262980
Alignment:
| Q |
182 |
ttggcattattgagaccagatggtcatgcaggagcttatatgaatccttt |
231 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||| ||||||||||| |
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|
| T |
15262931 |
ttggcattgttgagaccagatggtcatccaggtgcttacatgaatccttt |
15262980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 15265357 - 15265300
Alignment:
| Q |
174 |
taacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttt |
231 |
Q |
| |
|
||||||| ||||| || || ||||||||||||||| |||| |||||||||||||||| |
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| T |
15265357 |
taacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatccttt |
15265300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 15256839 - 15256783
Alignment:
| Q |
167 |
cttgatataacaaagttggcattattgagaccagatggtcatgcaggagcttatatg |
223 |
Q |
| |
|
|||||| |||| || |||||||| |||||||||||||||||| |||| |||||||| |
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|
| T |
15256839 |
cttgatgtaactaaattggcattgttgagaccagatggtcatccaggtccttatatg |
15256783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15262747 - 15262787
Alignment:
| Q |
1 |
ttttgaaggtgattgggataagggtggtacatgttcaaaga |
41 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||||||||| |
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|
| T |
15262747 |
ttttgatggtgattgggataaggctggaacatgttcaaaga |
15262787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 11807239 - 11807009
Alignment:
| Q |
1 |
ttttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagt |
100 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11807239 |
ttttgaaggttcttgggataagggaggtacttgttcaaagaaaaatccatataaatatgaggagaagaaacttgaaggaatggaagctaagataagaagt |
11807140 |
T |
|
| Q |
101 |
attgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccag |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||| | |||| || ||||| |||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |
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| T |
11807139 |
atggagatagaggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccag |
11807040 |
T |
|
| Q |
201 |
atggtcatgcaggagcttatatgaatccttt |
231 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |
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|
| T |
11807039 |
atggtcatgcaggagcttataggtatccttt |
11807009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 51383424 - 51383654
Alignment:
| Q |
1 |
ttttgaaggtgattgggataagggtggtacatgttcaaagagtgagccatataagaatgaggagaagaaacttgaaggaatggatgctaagataagaagt |
100 |
Q |
| |
|
||||||||||| |||||||||||| || || ||||||||||||||||||||| | |||| ||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
51383424 |
ttttgaaggtggttgggataagggaggaacttgttcaaagagtgagccatatgaaaatggggagaagaaacttgaagaaatggatgctgagataagaagt |
51383523 |
T |
|
| Q |
101 |
attgagatagaggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccag |
200 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
51383524 |
attgagatagaggaagtgaaaaatgctaagtcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgttgagaccag |
51383623 |
T |
|
| Q |
201 |
atggtcatgcaggagcttatatgaatccttt |
231 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |
|
|
| T |
51383624 |
atggtcatgcaggagcctacatgaatccttt |
51383654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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