View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189_low_17 (Length: 232)
Name: NF5189_low_17
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 24307701 - 24307479
Alignment:
| Q |
7 |
acatcatcaaacaacacttgataacaaatatttaaagacattttagaagtcatattatcaattccatcattatagtacaatcaaccagatcacattactt |
106 |
Q |
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| T |
24307701 |
acatcattaaacaacacttgataacaaatatttaaaaacattttagaagtcatatcatcaattccatcattatagtacaatcaaccagatcacattactt |
24307602 |
T |
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| Q |
107 |
caattacatcctcaaaataagaaaataaagctactaatcgaaacgtctaatgataactaaaaccagatccagcaaacaagaaataaaatcgatactatct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24307601 |
caattacatcctcaaaataagaaaataaagctactaatcgaaacgtctaatgataactaaaaccagatccagtaaacaagaaataaaatcgatactatct |
24307502 |
T |
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| Q |
207 |
tagatctaagaactagtgaactt |
229 |
Q |
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| T |
24307501 |
caaatctaagaactagtgaactt |
24307479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 23869015 - 23868985
Alignment:
| Q |
202 |
tatcttagatctaagaactagtgaacttagt |
232 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23869015 |
tatcttagatctaagaactagtgaacttagt |
23868985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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