View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5189_low_18 (Length: 212)

Name: NF5189_low_18
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5189_low_18
NF5189_low_18
[»] chr4 (3 HSPs)
chr4 (14-196)||(54396736-54396918)
chr4 (133-196)||(23587525-23587588)
chr4 (133-179)||(35132778-35132824)
[»] chr2 (4 HSPs)
chr2 (126-179)||(12235019-12235072)
chr2 (130-179)||(7542556-7542605)
chr2 (133-176)||(12245198-12245241)
chr2 (133-173)||(16657309-16657349)
[»] chr7 (11 HSPs)
chr7 (133-196)||(7877525-7877588)
chr7 (27-185)||(8017099-8017257)
chr7 (27-188)||(39985967-39986128)
chr7 (127-179)||(10494160-10494212)
chr7 (136-176)||(17260574-17260614)
chr7 (136-179)||(6789842-6789885)
chr7 (133-196)||(8102980-8103043)
chr7 (130-176)||(8659696-8659742)
chr7 (127-176)||(1301797-1301846)
chr7 (127-176)||(13333242-13333291)
chr7 (136-176)||(8585501-8585541)
[»] chr1 (1 HSPs)
chr1 (130-188)||(4678347-4678405)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 54396918 - 54396736
Alignment:
Q  14 aacctgtgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagc 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396918 aacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagc 54396819  T
Q  114 ttttcttggtcatccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396818 ttttcttggtcatccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatg 54396736  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 23587525 - 23587588
Alignment:
Q  133 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatg 196  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||    
T  23587525 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatg 23587588  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 35132824 - 35132778
Alignment:
Q  133 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacg 179  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||||||    
T  35132824 aagaatgcagttgttactgtgcctgcttattttagtgattctcaacg 35132778  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 12235072 - 12235019
Alignment:
Q  126 tccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacg 179  Q
    |||||| |||||||| |||||||| || ||||||||||||||||||||||||||    
T  12235072 tccagttaagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacg 12235019  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 7542605 - 7542556
Alignment:
Q  130 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacg 179  Q
    |||| |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7542605 gtgacgaatgcagttgttactgtacctgcttattttaatgattctcaacg 7542556  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 12245198 - 12245241
Alignment:
Q  133 aagaatgctgttgttactgttcctgcttatttcaatgattctca 176  Q
    |||||||||||||||||||| ||||||||||| | |||||||||    
T  12245198 aagaatgctgttgttactgtacctgcttattttagtgattctca 12245241  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 16657309 - 16657349
Alignment:
Q  133 aagaatgctgttgttactgttcctgcttatttcaatgattc 173  Q
    |||||||||||||||||||| || ||||| |||||||||||    
T  16657309 aagaatgctgttgttactgtgccagcttacttcaatgattc 16657349  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 7877525 - 7877588
Alignment:
Q  133 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatg 196  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||  |||| || |||||||    
T  7877525 aagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatg 7877588  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 8017099 - 8017257
Alignment:
Q  27 tgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagcttttcttggtcat 126  Q
    |||||| ||||| ||||| || ||| ||||||| || ||||||||||| || |||||  | || |||||| | ||  ||||||||||||  || |||       
T  8017099 tgttaactacaagggtgaggacaagcaatttgctgctgaggaaatttcgtctatggtactcataaagatgcgtgagattgctgaagcttacctcggttca 8017198  T
Q  127 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagc 185  Q
     | ||||||||||| |||||||| ||||| ||||| ||||||||||| || ||||||||    
T  8017199 actgtgaagaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagc 8017257  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 39986128 - 39985967
Alignment:
Q  27 tgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagcttttcttggtcat 126  Q
    |||||| |||||||||||||| ||| ||||||| || || || || ||||| |||||| | || |||||| | ||  |||| ||||| |  ||||||  |    
T  39986128 tgttaactacaaaggtgaagataaggaatttgctgccgaagagatctcttccatggtgctaatgaagatgcgtgagattgccgaagcgtaccttggttct 39986029  T
Q  127 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctac 188  Q
     |  | |||||||||||||||||||| |||||||| || ||||| || || |||||||||||    
T  39986028 gccattaagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctac 39985967  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 10494160 - 10494212
Alignment:
Q  127 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacg 179  Q
    ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||    
T  10494160 ccagtcaagaatgctgttgttactgtgccggcttacttcaacgattctcaacg 10494212  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 17260614 - 17260574
Alignment:
Q  136 aatgctgttgttactgttcctgcttatttcaatgattctca 176  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctca 17260574  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 6789885 - 6789842
Alignment:
Q  136 aatgctgttgttactgttcctgcttatttcaatgattctcaacg 179  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacg 6789842  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 8103043 - 8102980
Alignment:
Q  133 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatg 196  Q
    |||||||| || || ||||| |||||||| |||||||||||||| |||||||| || |||||||    
T  8103043 aagaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatg 8102980  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 8659742 - 8659696
Alignment:
Q  130 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctca 176  Q
    |||||||||||||||||||| || ||||| || ||||||||||||||    
T  8659742 gtgaagaatgctgttgttacagtgcctgcatagttcaatgattctca 8659696  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 1301846 - 1301797
Alignment:
Q  127 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctca 176  Q
    |||||||  ||||||||||||||||| |||||  ||||||||||||||||    
T  1301846 ccagtgacaaatgctgttgttactgtgcctgcacatttcaatgattctca 1301797  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 13333242 - 13333291
Alignment:
Q  127 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctca 176  Q
    ||||| |||||||| ||||||||||| || ||||| ||||||||||||||    
T  13333242 ccagtcaagaatgccgttgttactgtgccggcttacttcaatgattctca 13333291  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 8585501 - 8585541
Alignment:
Q  136 aatgctgttgttactgttcctgcttatttcaatgattctca 176  Q
    ||||| ||||| ||||| |||||||||||||||||||||||    
T  8585501 aatgcagttgtgactgtgcctgcttatttcaatgattctca 8585541  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 4678347 - 4678405
Alignment:
Q  130 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctac 188  Q
    ||||||||||  ||||||||||| ||||| || |||||||||||||||||  |||||||    
T  4678347 gtgaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctac 4678405  T

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