View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5189_low_4 (Length: 587)

Name: NF5189_low_4
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5189_low_4
NF5189_low_4
[»] chr2 (4 HSPs)
chr2 (19-544)||(39693579-39694106)
chr2 (531-578)||(39693523-39693570)
chr2 (135-199)||(2336696-2336762)
chr2 (146-192)||(2323694-2323740)
[»] chr4 (6 HSPs)
chr4 (145-199)||(29802613-29802667)
chr4 (93-191)||(31957580-31957681)
chr4 (146-196)||(23210827-23210876)
chr4 (137-192)||(30788297-30788354)
chr4 (145-186)||(2041166-2041207)
chr4 (166-195)||(50400019-50400048)
[»] chr7 (2 HSPs)
chr7 (145-192)||(23714892-23714939)
chr7 (148-199)||(7192787-7192838)
[»] chr1 (3 HSPs)
chr1 (146-191)||(7373363-7373408)
chr1 (146-179)||(8240396-8240429)
chr1 (148-200)||(47493819-47493871)
[»] chr8 (2 HSPs)
chr8 (153-199)||(11970314-11970360)
chr8 (145-199)||(40991825-40991879)
[»] chr3 (1 HSPs)
chr3 (145-199)||(41857496-41857550)
[»] chr6 (2 HSPs)
chr6 (163-200)||(10498844-10498881)
chr6 (146-199)||(29028162-29028215)


Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Complemental strand, 39694106 - 39693579
Alignment:
Q  19 ttctccaccaccaaaactatcacaagatgcatcccctgttagaaaacagttaggcaatgttgtttgttagggtttgttgagtcatgagtggagttcagag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39694106 ttctccaccaccaaaactatcacaagatgcatcccctgttagaaaacagttaggcaatgttgtttgttagggtttgttgagtcatgagtggagttcagag 39694007  T
Q  119 gatcatacacactaggtcagagcaaccacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttatactctcacttataaataac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  39694006 gatcatacacactaggtcagagcaaccacaagtgagttggacaccacatcttaacccaaaatcttaaggcattgagtttatgctctcacttataaataac 39693907  T
Q  219 gtgagatttttaactcac--ttgccacgcattagggtctgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatca 316  Q
    ||||||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693906 gtgagatttttaactcacacttgctacgcattagggtttgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatca 39693807  T
Q  317 tttctattgaaacaaaaagaaaatcatcacaacaatggactccaacaccaaaagcaatttctccactcattaatcttctatgaactttatcaaccatgca 416  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693806 tttctattgaaacagaaagaaaatcatcacaacaatggactccaacaccaaaagcaatttctccactcattaatcttctatgaactttatcaaccatgca 39693707  T
Q  417 tttagagagaattaaccatgattttcaagtgttcatgtatgtggtgtcattgtaaacttcttgtaaagttgatcaatcacaaatcaacatcagttgtaag 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693706 tttagagagaattaaccatgattttcaagtgttcatgtatgtggtgtcattgtaaacttcttgtaaagttgatcaatcacaaatcaacatcagttgtaag 39693607  T
Q  517 cttgacataaccaaaccaaagtacacct 544  Q
    ||||||||||||||||||||||||||||    
T  39693606 cttgacataaccaaaccaaagtacacct 39693579  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 531 - 578
Target Start/End: Complemental strand, 39693570 - 39693523
Alignment:
Q  531 accaaagtacacctagtgctttgttctaggcttttttattagtataat 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693570 accaaagtacacctagtgctttgttctaggcttttttattagtataat 39693523  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 2336762 - 2336696
Alignment:
Q  135 tcagagcaaccaca--agtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 199  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  2336762 tcagagcaaccacacaagtgagttggacaccacatcttaacccaaaatcttaaggcattgaatttat 2336696  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 2323740 - 2323694
Alignment:
Q  146 acaagtgagttggacaccatatcttaacccaaaatcttaagacattg 192  Q
    ||||||||||||||||||| ||||||||| |||| |||||| |||||    
T  2323740 acaagtgagttggacaccacatcttaacctaaaaccttaaggcattg 2323694  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 29802667 - 29802613
Alignment:
Q  145 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 199  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||    
T  29802667 cacaagtgagttggacaccatatcttaacacaaaaccttaaggcattgggtttat 29802613  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 31957681 - 31957580
Alignment:
Q  93 tgttgagtcatgagtggagttcagaggatcatacacactaggtca-gagcaaccac--aagtgagttggacaccatatcttaacccaaaatcttaagaca 189  Q
    ||||| |||||||| |||| |||| ||||||| | ||  ||| || ||||||||||  ||||||||||||||||| |||||||||||||| |||||| ||    
T  31957681 tgttgggtcatgaggggagctcaggggatcatcctcatcagggcaagagcaaccacgcaagtgagttggacaccacatcttaacccaaaaccttaaggca 31957582  T
Q  190 tt 191  Q
    ||    
T  31957581 tt 31957580  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 23210827 - 23210876
Alignment:
Q  146 acaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtt 196  Q
    |||||||||||||||| || ||||||| || ||||||||||||||||||||    
T  23210827 acaagtgagttggacatcacatcttaa-cctaaatcttaagacattgagtt 23210876  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 30788354 - 30788297
Alignment:
Q  137 agagcaaccac--aagtgagttggacaccatatcttaacccaaaatcttaagacattg 192  Q
    |||||||||||  || ||||||| |||||| |||||||||||||| ||||||||||||    
T  30788354 agagcaaccactcaattgagttgaacaccacatcttaacccaaaaccttaagacattg 30788297  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 2041207 - 2041166
Alignment:
Q  145 cacaagtgagttggacaccatatcttaacccaaaatcttaag 186  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  2041207 cacaagtgagttggacaccacatcttcacccaaaaccttaag 2041166  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 50400048 - 50400019
Alignment:
Q  166 atcttaacccaaaatcttaagacattgagt 195  Q
    ||||||||||||||||||||||||||||||    
T  50400048 atcttaacccaaaatcttaagacattgagt 50400019  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 23714892 - 23714939
Alignment:
Q  145 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattg 192  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  23714892 cacaagtgagttggacaccacatcttcacccaaaatcttaaggcattg 23714939  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 7192838 - 7192787
Alignment:
Q  148 aagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 199  Q
    |||||||||||||| || ||||| || ||||| |||||||||||||||||||    
T  7192838 aagtgagttggacatcacatctttactcaaaaccttaagacattgagtttat 7192787  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 7373408 - 7373363
Alignment:
Q  146 acaagtgagttggacaccatatcttaacccaaaatcttaagacatt 191  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  7373408 acaagtgagttggacaccacatcttaaccaaaaattttaagacatt 7373363  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 8240396 - 8240429
Alignment:
Q  146 acaagtgagttggacaccatatcttaacccaaaa 179  Q
    ||||||||||||||||||| ||||||||||||||    
T  8240396 acaagtgagttggacaccacatcttaacccaaaa 8240429  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 47493871 - 47493819
Alignment:
Q  148 aagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttata 200  Q
    |||||||||||||   |||||||||| |||||| |||||| ||||||||||||    
T  47493871 aagtgagttggacgtaatatcttaactcaaaattttaagatattgagtttata 47493819  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 11970360 - 11970314
Alignment:
Q  153 agttggacaccatatcttaacccaaaatcttaagacattgagtttat 199  Q
    |||||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  11970360 agttgggcaccacatcttaacccaaaatctaaaggcattgagtttat 11970314  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 40991879 - 40991825
Alignment:
Q  145 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 199  Q
    |||| ||||||||||||||| |||||||||||||| ||| || ||||| ||||||    
T  40991879 cacaggtgagttggacaccacatcttaacccaaaaccttgaggcattgggtttat 40991825  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 41857550 - 41857496
Alignment:
Q  145 cacaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 199  Q
    ||||||||||||| ||| || ||||||||||||||  ||||| ||||||||||||    
T  41857550 cacaagtgagttgaacatcacatcttaacccaaaactttaagtcattgagtttat 41857496  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 10498844 - 10498881
Alignment:
Q  163 catatcttaacccaaaatcttaagacattgagtttata 200  Q
    |||||||||||||||||  |||||||||||||||||||    
T  10498844 catatcttaacccaaaactttaagacattgagtttata 10498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 29028215 - 29028162
Alignment:
Q  146 acaagtgagttggacaccatatcttaacccaaaatcttaagacattgagtttat 199  Q
    |||||| |||||||||||| |||||||| |||||  ||| ||||||||||||||    
T  29028215 acaagtaagttggacaccacatcttaactcaaaacattaggacattgagtttat 29028162  T

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