View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5189_low_8 (Length: 378)
Name: NF5189_low_8
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5189_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 9323617 - 9323274
Alignment:
| Q |
14 |
aaattgcaaaattgtaggattttaggattatgattgagattttaacaacaatgatttctagaagattttgatcacaagattgtctctcaagcaaaagtgc |
113 |
Q |
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| T |
9323617 |
aaattgcaaaattttaggattttaggattaggattgagattttaacaacaatgatttctagaagattttgatcgaaagattgtctctcaagcaaaagtgc |
9323518 |
T |
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| Q |
114 |
attgtatttgtgtctctggtgtgtagtgcacttatgtgcatataataatagaaatgcaaatcaattttgcttatgctgctagtacatgttttggaacttc |
213 |
Q |
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| T |
9323517 |
attgtatttgtgtctctggtgtgtagtgcacttatgtgcatataataatagaaatgcaaatcaattttgcttatgctgc--gtacatgtttcggaacttc |
9323420 |
T |
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| Q |
214 |
tcattcattatatctgtttgttattattgttaatatttgaagtttgaacttgctgttaaattctaattctcagattgatcaggaagaaacggtccacaat |
313 |
Q |
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| T |
9323419 |
tcattcattatatctgtttgttattattgttaatatttgaagtttgaacttgctgttaaattctaattctcagattgatcaggaagaaacggtccacaat |
9323320 |
T |
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| Q |
314 |
tgacatgggcacacaagctcaaagtagcagttgatgtagcacgtgg |
359 |
Q |
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| T |
9323319 |
tgacatgggcacacaagctcaaagtagcagttgatgtagcacgtgg |
9323274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 359
Target Start/End: Original strand, 11423735 - 11423849
Alignment:
| Q |
245 |
aatatttgaagtttgaacttgctgttaaattctaattctcagattgatcaggaagaaacggtccacaattgacatgggcacacaagctcaaagtagcagt |
344 |
Q |
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| T |
11423735 |
aatatttgacgtttaaactttcctataaattgaaattcttagatcgaccaggaagaaacggtccaccattaacatgggcacagaggctcaaaatagcagt |
11423834 |
T |
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| Q |
345 |
tgatgtagcacgtgg |
359 |
Q |
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| T |
11423835 |
tgatgtagcacgtgg |
11423849 |
T |
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