View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5189_low_9 (Length: 362)

Name: NF5189_low_9
Description: NF5189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5189_low_9
NF5189_low_9
[»] chr7 (9 HSPs)
chr7 (14-348)||(34720916-34721250)
chr7 (194-348)||(34727413-34727567)
chr7 (212-348)||(18929159-18929295)
chr7 (194-348)||(34735170-34735324)
chr7 (194-348)||(34730571-34730725)
chr7 (243-348)||(34715585-34715690)
chr7 (219-339)||(34717323-34717442)
chr7 (212-255)||(18924337-18924380)
chr7 (216-277)||(36215590-36215651)
[»] chr4 (22 HSPs)
chr4 (192-284)||(6624090-6624182)
chr4 (192-289)||(6794653-6794750)
chr4 (216-276)||(4126135-4126195)
chr4 (216-276)||(4322800-4322860)
chr4 (192-267)||(6547564-6547639)
chr4 (192-267)||(6814005-6814080)
chr4 (192-266)||(6500009-6500083)
chr4 (216-277)||(4333795-4333856)
chr4 (192-284)||(6726144-6726236)
chr4 (192-267)||(6672887-6672962)
chr4 (212-295)||(6751050-6751133)
chr4 (212-267)||(6756696-6756751)
chr4 (218-276)||(4343186-4343244)
chr4 (212-290)||(8413028-8413106)
chr4 (195-276)||(4358654-4358735)
chr4 (219-263)||(4135482-4135526)
chr4 (216-276)||(4351473-4351533)
chr4 (192-267)||(6535313-6535388)
chr4 (192-267)||(6714042-6714117)
chr4 (212-267)||(6834399-6834454)
chr4 (216-339)||(7888444-7888567)
chr4 (212-257)||(6649296-6649341)
[»] scaffold0373 (1 HSPs)
scaffold0373 (192-289)||(11553-11650)
[»] chr6 (3 HSPs)
chr6 (192-276)||(5075405-5075489)
chr6 (192-267)||(5183626-5183701)
chr6 (212-269)||(5381900-5381957)
[»] scaffold0294 (1 HSPs)
scaffold0294 (216-266)||(10366-10416)
[»] chr8 (1 HSPs)
chr8 (316-349)||(3313204-3313237)


Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 34720916 - 34721250
Alignment:
Q  14 catcatcgcttaaatcatcaacacttattctcagtatcttcgttatcccctcgcaatttactagtttatgccgaaccgtaccccacactcttctacttgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34720916 catcatcgcttaaatcatcaacacttattctcagtatcttcgttatcccctcgcaatttactagtttatgccgaaccgtaccccacactcttctacttgg 34721015  T
Q  114 attggacaaaaaggacccgatgatttcaagaagtaatggtattcttctacaatactcaacaacacatttggaactgtgagcaaaaccttctcttggaatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721016 attggacaaaaaggacccgatgatttcaagaagtaatggtattcttctacaatactcaacaacacatttggaactgtgagcaaaaccttctcttggaatt 34721115  T
Q  214 ggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatccacctgaagcctgtgaagtaaat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  34721116 ggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgaattcattgtatacacatgatccacctgaagcctgcgaagtaaat 34721215  T
Q  314 caacatctcttgttgtgatgattattacacttcct 348  Q
    |||||||||||||||||||||||||||||||||||    
T  34721216 caacatctcttgttgtgatgattattacacttcct 34721250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 348
Target Start/End: Original strand, 34727413 - 34727567
Alignment:
Q  194 caaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatccac 293  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||||| |||||||||||| |  |||||||| | |||||| |||||||||  || ||    
T  34727413 caaaaccttctataggaattggttgcttgaatgcatgccaactaaaaagctcaagagattcattgccatccatttctttcattctatacacatagtcaac 34727512  T
Q  294 ctgaagcctgtgaagtaaatcaacatctcttgttgtgatgattattacacttcct 348  Q
     | ||||||   |||||||||| |||||||||| ||||| ||||||  |||||||    
T  34727513 tttaagcctactaagtaaatcatcatctcttgtagtgatcattattctacttcct 34727567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 348
Target Start/End: Complemental strand, 18929295 - 18929159
Alignment:
Q  212 ttggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatccacctgaagcctgtgaagtaa 311  Q
    |||||||||||||||||| |||||||||||| |||||||||||| | || |||||| | |||||| |||||||||  |  || | ||||||   ||||||    
T  18929295 ttggttgcttgaatgcatgccaactaaaaagctcaagagattcattgtcgtccatttctttcattctatacacatagtgaactttaagcctactaagtaa 18929196  T
Q  312 atcaacatctcttgttgtgatgattattacacttcct 348  Q
    |||| |||||||||||||||||||||||  |||||||    
T  18929195 atcatcatctcttgttgtgatgattattctacttcct 18929159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 348
Target Start/End: Original strand, 34735170 - 34735324
Alignment:
Q  194 caaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatccac 293  Q
    ||||||||||| | ||||||||||| |||||||||| |||||||||||| |||||||||||| |    |||||| | |||||| |||||||||  |  ||    
T  34735170 caaaaccttctataggaattggttgtttgaatgcatgccaactaaaaagctcaagagattcattgctgtccatttctttcattctatacacatagtgaac 34735269  T
Q  294 ctgaagcctgtgaagtaaatcaacatctcttgttgtgatgattattacacttcct 348  Q
     | ||||||   |||||||||| |||||||||||||||||||||||  |||||||    
T  34735270 tttaagcctaccaagtaaatcatcatctcttgttgtgatgattattctacttcct 34735324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 348
Target Start/End: Original strand, 34730571 - 34730725
Alignment:
Q  194 caaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatccac 293  Q
    ||||||||||| | |||||||||||||||||| ||| |||||| ||||| |||||||||||| |    |||||| | |||||| |||||||||  |  ||    
T  34730571 caaaaccttctataggaattggttgcttgaatacatgccaactgaaaagctcaagagattcattgctgtccatttctttcattctatacacatagtgaac 34730670  T
Q  294 ctgaagcctgtgaagtaaatcaacatctcttgttgtgatgattattacacttcct 348  Q
     | ||||||   |||||||||| |||||||||||||||||||||||  |||||||    
T  34730671 tttaagcctaccaagtaaatcatcatctcttgttgtgatgattattctacttcct 34730725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 34715585 - 34715690
Alignment:
Q  243 ttcaagagattcactctcatccattgcgttcattgtatacacatgatccacctgaagcctgtgaagtaaatcaacatctcttgttgtgatgattattaca 342  Q
    |||||| |||||||| |||| |||||| |||| |||||| ||||| |||||||||||||   |||||||||||  |||||| |||||||||||||||| |    
T  34715585 ttcaagggattcactgtcattcattgcattcactgtatatacatggtccacctgaagccaccgaagtaaatcatgatctctcgttgtgatgattattata 34715684  T
Q  343 cttcct 348  Q
    ||||||    
T  34715685 cttcct 34715690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 34717323 - 34717442
Alignment:
Q  219 cttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatccacctgaagcctgtgaagtaaatcaaca 318  Q
    ||||||||||  |||||| |||| ||||||||||||| |||  |||||| | || ||| |||| ||||| ||||||| ||||||   ||||| |||| ||    
T  34717323 cttgaatgcaatccaactgaaaacttcaagagattcattcttgtccatttctttgattctatatacatg-tccaccttaagcctacaaagtagatcatca 34717421  T
Q  319 tctcttgttgtgatgattatt 339  Q
    |||||||||||||||||||||    
T  34717422 tctcttgttgtgatgattatt 34717442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 18924380 - 18924337
Alignment:
Q  212 ttggttgcttgaatgcataccaactaaaaagttcaagagattca 255  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  18924380 ttggttgcttgaatgcatacaaactaaaaagctcaagagattca 18924337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 36215590 - 36215651
Alignment:
Q  216 ttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattg 277  Q
    |||||||||||||| |||||||||||| ||||  |||||||| ||||||||| | |||||||    
T  36215590 ttgcttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctttcattg 36215651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 6624090 - 6624182
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacac 284  Q
    |||||||||||||   ||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| | |  |||||||||||    
T  6624090 agcaaaaccttctgccggacttggttgcttgaatgcatgccaactgaaaagctcaagagattcactctcatccatttcttcaattgtatacac 6624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 289
Target Start/End: Complemental strand, 6794750 - 6794653
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgat 289  Q
    |||||||  |||| ||||| |||||||||||||||||| |||||| ||||| | |||||||||||| ||||||||| | |  ||||||||||| ||||    
T  6794750 agcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacctgat 6794653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 4126135 - 4126195
Alignment:
Q  216 ttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcatt 276  Q
    ||||||||| |||| ||||||||||||||||||||||||||| ||||||||| | ||||||    
T  4126135 ttgcttgaaagcatgccaactaaaaagttcaagagattcactttcatccatttctttcatt 4126195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 4322800 - 4322860
Alignment:
Q  216 ttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcatt 276  Q
    |||||||||||||| |||||||||||| |||||||||||||| ||||||||| | ||||||    
T  4322800 ttgcttgaatgcatgccaactaaaaagctcaagagattcactttcatccatttctttcatt 4322860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 6547564 - 6547639
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 267  Q
    ||||||| ||||| ||||| |||||||||||||||||| |||||| || || |||||||||||| | |||||||||    
T  6547564 agcaaaatcttctattggacttggttgcttgaatgcatgccaactgaatagctcaagagattcaatttcatccatt 6547639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 6814080 - 6814005
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 267  Q
    ||||||| ||||| | ||| |||||||||||||||||| |||||| ||||| | |||||||||||| |||||||||    
T  6814080 agcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatt 6814005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 6500009 - 6500083
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccat 266  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||| || ||||| |||||||||||||| || |||||    
T  6500009 agcaaaatcttctgttggagttggttgcttgaatgcatgccagctgaaaagctcaagagattcactttcgtccat 6500083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 4333856 - 4333795
Alignment:
Q  216 ttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattg 277  Q
    |||||||||||||| | |||||||||| |||||||||||||| ||||||||| | |||||||    
T  4333856 ttgcttgaatgcatgcaaactaaaaagctcaagagattcactttcatccatttctttcattg 4333795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 6726236 - 6726144
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacac 284  Q
    ||||||| ||||| ||||| ||| |||||||||||||| |||||| ||||| |  ||||||||||| ||||||||| | |  |||||||||||    
T  6726236 agcaaaatcttcttttggacttgattgcttgaatgcatgccaactgaaaagcttgagagattcactttcatccatttcttctattgtatacac 6726144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 6672962 - 6672887
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 267  Q
    ||||||| |||||  |||||||||| ||||||| |||| |||||| ||||| || ||||||||||| |||||||||    
T  6672962 agcaaaatcttctactggaattggtagcttgaacgcatgccaactgaaaagctctagagattcactttcatccatt 6672887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 6751133 - 6751050
Alignment:
Q  212 ttggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatccacct 295  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||| || | |||| | || |||| |||||| ||||| ||||    
T  6751133 ttggttgcttgaatgcatgccaactgaaaagctcaagagattcactttcgttcatttcttttattgcatacacttgatcaacct 6751050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 6756751 - 6756696
Alignment:
Q  212 ttggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 267  Q
    |||||||||||||||||| |||||| ||||| ||||||||||| || |||||||||    
T  6756751 ttggttgcttgaatgcatgccaactgaaaagctcaagagattcgctttcatccatt 6756696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 4343244 - 4343186
Alignment:
Q  218 gcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcatt 276  Q
    |||||||||||| |||||||||||| ||||||||||||||  |||||||| | ||||||    
T  4343244 gcttgaatgcatgccaactaaaaagctcaagagattcacttccatccatttctttcatt 4343186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 8413106 - 8413028
Alignment:
Q  212 ttggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatc 290  Q
    |||||||||||||||||| |||||| ||||| |  ||||||||||| || |||||| | || ||||||||||| |||||    
T  8413106 ttggttgcttgaatgcatgccaactgaaaagcttgagagattcactttcgtccatttcttttattgtatacacttgatc 8413028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 4358735 - 4358654
Alignment:
Q  195 aaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcatt 276  Q
    |||| ||||||| ||  ||| ||||||||| || | |||||||||||| |||||||||||||| ||||||||| | ||||||    
T  4358735 aaaatcttctctaggccttgtttgcttgaacgcgtgccaactaaaaagctcaagagattcactttcatccatttctttcatt 4358654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 4135482 - 4135526
Alignment:
Q  219 cttgaatgcataccaactaaaaagttcaagagattcactctcatc 263  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||    
T  4135482 cttgaatgcatgccaactaaaaagctcaagagattcactttcatc 4135526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 4351533 - 4351473
Alignment:
Q  216 ttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcatt 276  Q
    |||||||||||||| |||||||||| | |||||||||||||| |||| |||| | ||||||    
T  4351533 ttgcttgaatgcatgccaactaaaacgctcaagagattcactttcattcatttctttcatt 4351473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 6535313 - 6535388
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 267  Q
    ||||||| ||||| | ||| |||||| ||||||||||| |||||| |||||  |||||| |||||| |||||||||    
T  6535313 agcaaaatcttctatcggacttggtttcttgaatgcatgccaactgaaaagagcaagagcttcactttcatccatt 6535388  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 6714117 - 6714042
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 267  Q
    |||||||||||||   |||  ||||||||| ||||||| ||| | |||||| ||||||||||| ||||||||||||    
T  6714117 agcaaaaccttctggcggacatggttgcttaaatgcatgccagcaaaaaagctcaagagattccctctcatccatt 6714042  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 6834454 - 6834399
Alignment:
Q  212 ttggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 267  Q
    ||||| |||||||||||| |||||| ||||| |||||||||||||| || ||||||    
T  6834454 ttggtagcttgaatgcatgccaactgaaaagctcaagagattcactttcgtccatt 6834399  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 7888444 - 7888567
Alignment:
Q  216 ttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgatccacctgaagcctgtgaagtaaatca 315  Q
    |||||||||||||| |||| ||||||| || |||||||||||   ||||||| | |||||| | || ||||| || || | ||||||    |||||||||    
T  7888444 ttgcttgaatgcatgccaattaaaaagctctagagattcactgctatccatttccttcattctgtatacatggtcgacttcaagcctactgagtaaatca 7888543  T
Q  316 acatctcttgttgtgatgattatt 339  Q
     |||| ||||||||||||| ||||    
T  7888544 tcatcccttgttgtgatgagtatt 7888567  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 6649341 - 6649296
Alignment:
Q  212 ttggttgcttgaatgcataccaactaaaaagttcaagagattcact 257  Q
    ||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  6649341 ttggttgattgaatgcatgccaactgaaaagctcaagagattcact 6649296  T

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Target: scaffold0373 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 11553 - 11650
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcattgtatacacatgat 289  Q
    |||||||  |||| ||||| |||||||||||||||||| |||||| ||||| | |||||||||||| ||||||||| | |  ||||||||||| ||||    
T  11553 agcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacctgat 11650  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 5075405 - 5075489
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgcgttcatt 276  Q
    ||||||| ||||| | ||| ||| ||| |||||||||| |||||||||||| ||||  |||||||| ||||||||| | ||||||    
T  5075405 agcaaaatcttctataggacttgcttgtttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctttcatt 5075489  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 5183626 - 5183701
Alignment:
Q  192 agcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 267  Q
    ||||||||||||||| |||  || |||||||||||||| ||||||||| || ||||  ||||| || |||||||||    
T  5183626 agcaaaaccttctctaggacctgcttgcttgaatgcatgccaactaaatagctcaattgattcgctttcatccatt 5183701  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 5381957 - 5381900
Alignment:
Q  212 ttggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccattgc 269  Q
    |||||||||||||||||| ||| |||||||| ||||  |||||||  |||||||||||    
T  5381957 ttggttgcttgaatgcatgccagctaaaaagctcaattgattcacaatcatccattgc 5381900  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 10366 - 10416
Alignment:
Q  216 ttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccat 266  Q
    |||||||||||||| |||||||||||| ||||  |||||||| ||||||||    
T  10366 ttgcttgaatgcatgccaactaaaaagctcaattgattcactatcatccat 10416  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 3313237 - 3313204
Alignment:
Q  316 acatctcttgttgtgatgattattacacttcctg 349  Q
    ||||||||||||||||||||||||| ||||||||    
T  3313237 acatctcttgttgtgatgattattatacttcctg 3313204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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