View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5190-Insertion-1 (Length: 703)
Name: NF5190-Insertion-1
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 301 - 681
Target Start/End: Complemental strand, 34860584 - 34860211
Alignment:
| Q |
301 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860584 |
aattgatctccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
34860485 |
T |
|
| Q |
401 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcgcctattctaaagatattagctggcttgccttgacatggatggataatttctc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34860484 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacat-gatggataatttctc |
34860386 |
T |
|
| Q |
501 |
tattttaacagtcttccctacataaatattactctatctgttgcataaaatactctcggtgatgaatccaccaagaaaaatttgcaaagtaaaccttcag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
34860385 |
tattttaacagtcttccctacataaatactactctatctgttgcat-aaatactctcggtgatgaatccaccaag-aaaatttgc-aagtaaaccttcag |
34860289 |
T |
|
| Q |
601 |
aaaaggaccaattttgnnnnnnnaatcctagtaactacataactttgtttgcacttgttgtattgaatggcattcattaca |
681 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34860288 |
-aaaggaccaattttg-ttttttaatcctagt-actacataactttgtttgcacttgttgtattgaatgtcattcattaca |
34860211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 34860869 - 34860600
Alignment:
| Q |
7 |
atatacgacatatgaacctataatattagcatatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgat |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860869 |
atatacgacatatgaacctata-tattagcttatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgat |
34860771 |
T |
|
| Q |
107 |
ttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860770 |
ttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatat |
34860671 |
T |
|
| Q |
207 |
ttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagcttatatgtgtaagttga |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34860670 |
ttttgtttgaaagtggattatagatttagcctgcagggaaatacatgatgaagcttatatgtgtaagttga |
34860600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 19745778 - 19745640
Alignment:
| Q |
101 |
tatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatga |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| || | ||||||||| | ||||| ||||| ||||| |||||||||| ||| |||||| |
|
|
| T |
19745778 |
tatgatttggatatttagttatgttgaagtttatatatgatatattaacttatatatcgtcttatgcaaatggttgtttacttgtttgattcataaatga |
19745679 |
T |
|
| Q |
201 |
taatatttttg-tttgaaagtggattatagatttagggt |
238 |
Q |
| |
|
|||| || | | ||| |||| |||| ||||||||||||| |
|
|
| T |
19745678 |
taatgttgtagttttaaaagaggatgatagatttagggt |
19745640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 34860895 - 34860788
Alignment:
| Q |
107 |
ttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatat |
206 |
Q |
| |
|
||||||||||||| | |||||||| ||||| ||||| ||||| ||||| ||||||||| ||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
34860895 |
ttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcttatgaaaattgttgctcacttgtttgactaaaaaattctaataa |
34860796 |
T |
|
| Q |
207 |
ttttgttt |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
34860795 |
ttttgttt |
34860788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 2242506 - 2242594
Alignment:
| Q |
301 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
387 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||| ||||||||||| | ||||||| | ||||||||||||||| || || |||||| |
|
|
| T |
2242506 |
aattgatctccttactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 2242244 - 2242318
Alignment:
| Q |
186 |
ttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagc |
260 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||| ||||||||||| || | |||||||||||||||| |
|
|
| T |
2242244 |
ttgactcaaaaattctaatatttttgttttgaagaggatcatagatttaggatggatacaaatacatgatgaagc |
2242318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 24023073 - 24023112
Alignment:
| Q |
101 |
tatgatttggatctttagttatgttgaagttcatatatga |
140 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
24023073 |
tatgacttggatctttatttatgttgaagttcatatatga |
24023112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 5757427 - 5757387
Alignment:
| Q |
307 |
tctccctacttaaatacaacaaatct-ttttaccacttctc |
346 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
5757427 |
tctccctactcaaatacaacaaatcttttttaccacttctc |
5757387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University