View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5190-Insertion-11 (Length: 323)

Name: NF5190-Insertion-11
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5190-Insertion-11
NF5190-Insertion-11
[»] chr6 (5 HSPs)
chr6 (7-323)||(376525-376841)
chr6 (6-316)||(347654-347964)
chr6 (6-316)||(356313-356623)
chr6 (18-147)||(336917-337046)
chr6 (64-147)||(340955-341038)


Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 376841 - 376525
Alignment:
Q  7 accactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttcttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  376841 accactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttcttt 376742  T
Q  107 gtttgaaaatagagtggagaagagacctattatatttccatgtctttgaatcagcgttgagtattccatctccaaaggcttcaaatatctcatgaaattc 206  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  376741 gtttaaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattc 376642  T
Q  207 atgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattttggtaaaccaaggtccc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  376641 atgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattttggtaaaccaaggtccc 376542  T
Q  307 atgaactcaccactacc 323  Q
    |||||||||||||||||    
T  376541 atgaactcaccactacc 376525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 347654 - 347964
Alignment:
Q  6 caccactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctt 105  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||    
T  347654 caccactgacccttgttgttgtacatggtcaaacaaaggaatcaaacttctctccaacttgttttgaatgattttcttttgaaacaattcaaaatctctt 347753  T
Q  106 tgtttgaaaatagagtggagaagagacctattatatttccatgtctttgaatcagcgttgagtattccatctccaaaggcttcaaatatctcatgaaatt 205  Q
    ||||||||||||||||| | |||||||||||| ||||||||| |||  ||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  347754 tgtttgaaaatagagtgaaaaagagacctattgtatttccatttctccgaatcagcgttgaatattccatctccaaaggcttcaaaaatctcatgaaatt 347853  T
Q  206 catgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcc 305  Q
    | |||||||| |||||||| ||||||| ||||||||| ||||||||||| ||||| ||||||||||| |  ||||| ||||| |||||||||||||||||    
T  347854 cttgaccctttacataattatcaaaacacttgctcatcatgtgatgcacgttcatagggtcactagtaaccaaatagttcatgttggtaaaccaaggtcc 347953  T
Q  306 catgaactcac 316  Q
    |||||||||||    
T  347954 catgaactcac 347964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 356313 - 356623
Alignment:
Q  6 caccactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctt 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||   ||||    
T  356313 caccactgagccttgttgttgtacatggtccaacaaaggaatcaaacttttctccaacttgttttgaatgattttcttttgaaacatttcaaaatctctt 356412  T
Q  106 tgtttgaaaatagagtggagaagagacctattatatttccatgtctttgaatcagcgttgagtattccatctccaaaggcttcaaatatctcatgaaatt 205  Q
      ||| ||||||||||| | |||||||||||| |||||||||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||| |||    
T  356413 attttcaaaatagagtgaaaaagagacctattgtatttccatgtctccgaatcagtgttgaatattccatctccaaaggcttcaaatatctcatgatatt 356512  T
Q  206 catgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcc 305  Q
    |||||||||| |||||||||||||||  |||||| |  ||||||||||  || ||||||||||||||||  ||||| |||||  ||||||||||||||||    
T  356513 catgacccttaacataattgtcaaaagacttgcttaacatgtgatgcaagttgatggggtcactagtgaccaaatagttcatgctggtaaaccaaggtcc 356612  T
Q  306 catgaactcac 316  Q
    |||||||||||    
T  356613 catgaactcac 356623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 337046 - 336917
Alignment:
Q  18 ttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaata 117  Q
    ||||||||| ||||| | ||| |||||||||||   | |||| |  ||||| ||||||||||||||||||||   ||||||||||||||||||||| | |    
T  337046 ttgttgttgaacatgattcaataaaggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagaga 336947  T
Q  118 gagtggagaagagacctattatatttccat 147  Q
     | |||||||||  |||||| |||||||||    
T  336946 tattggagaagattcctattgtatttccat 336917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 341038 - 340955
Alignment:
Q  64 ttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtggagaagagacctattatatttccat 147  Q
    ||||| ||||| || |||||||||||   ||||||||||||||||||||| | | | |||||||||  |||||| |||||||||    
T  341038 ttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccat 340955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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