View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190-Insertion-2 (Length: 620)
Name: NF5190-Insertion-2
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 17109857 - 17110266
Alignment:
| Q |
8 |
ccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109857 |
ccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactc |
17109956 |
T |
|
| Q |
108 |
ttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17109957 |
ttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagatttcggggaactgtccattccttttagaaag |
17110056 |
T |
|
| Q |
208 |
atgcaagaaaccttatggaa-----------aggattgcgcatattcaatgtataatgattgacgatcctgagagggaccaacagtcatagtgcccaaca |
296 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110057 |
atgcaagaaaccttatggaaaggattgcgagaggattgcgcatattcaatgtataatgattgacgatcctgagagggaccaacagtcatagtgcccaaca |
17110156 |
T |
|
| Q |
297 |
attactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggacccac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110157 |
attactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggacccac |
17110256 |
T |
|
| Q |
397 |
tttaaaatga |
406 |
Q |
| |
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|||||||||| |
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| T |
17110257 |
tttaaaatga |
17110266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 405 - 620
Target Start/End: Original strand, 17110288 - 17110503
Alignment:
| Q |
405 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcccaagtgggtaataatataaatcaatacagttgg |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17110288 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcctaagtgggtaataatataaatcaatacagttgg |
17110387 |
T |
|
| Q |
505 |
agacgtacacacaattggccgagcttaattagttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
604 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110388 |
agacgtacacgcaattggccgagcttaattagttaccaaacgtcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
17110487 |
T |
|
| Q |
605 |
ttctaacactatctga |
620 |
Q |
| |
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|||||||||||||||| |
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| T |
17110488 |
ttctaacactatctga |
17110503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 17030400 - 17030608
Alignment:
| Q |
11 |
ctctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactctta |
110 |
Q |
| |
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||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| | |
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| T |
17030400 |
ctctctcttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaa |
17030499 |
T |
|
| Q |
111 |
aaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatg |
210 |
Q |
| |
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| || ||||||||||| || | || || ||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | ||| | || |||| |
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| T |
17030500 |
ataattgtcccaacatccaatgcttgccaaaggagggtcttcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatg |
17030599 |
T |
|
| Q |
211 |
caagaaacc |
219 |
Q |
| |
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||||||||| |
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| T |
17030600 |
caagaaacc |
17030608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 17048738 - 17048946
Alignment:
| Q |
11 |
ctctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactctta |
110 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| | |
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| T |
17048738 |
ctctctcttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaa |
17048837 |
T |
|
| Q |
111 |
aaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatg |
210 |
Q |
| |
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| || ||||||||||| || | || || ||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | ||| | || |||| |
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| T |
17048838 |
ataattgtcccaacatccaatgcttgccaaaggagggtcttcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatg |
17048937 |
T |
|
| Q |
211 |
caagaaacc |
219 |
Q |
| |
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||||||||| |
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| T |
17048938 |
caagaaacc |
17048946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 16978529 - 16978736
Alignment:
| Q |
12 |
tctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaa |
111 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| ||||||||| | |||| | ||| || |
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| T |
16978529 |
tctctcttacttatctaaatatttgtggttgtcgaaatctcaaacaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaa |
16978628 |
T |
|
| Q |
112 |
aaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatgc |
211 |
Q |
| |
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|| ||||||||||| || | || || ||||||||||| |||| |||||| |||||| |||| || |||||||| ||| || | ||| | || ||||| |
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| T |
16978629 |
taattgtcccaacatccaatgcttgccaaaggagggtctgcctaaatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatgc |
16978728 |
T |
|
| Q |
212 |
aagaaacc |
219 |
Q |
| |
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|||||||| |
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| T |
16978729 |
aagaaacc |
16978736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 620
Target Start/End: Original strand, 17126147 - 17126216
Alignment:
| Q |
550 |
tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctga |
620 |
Q |
| |
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||||||||||||||||||||||| || |||| ||||||| ||||| |||| |||||||||||||||||| |
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| T |
17126147 |
tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctga |
17126216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 612
Target Start/End: Original strand, 35052192 - 35052265
Alignment:
| Q |
537 |
ttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaaca |
612 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||| |||||||| ||||||| || || |||||||||||||| |
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| T |
35052192 |
ttaccaaacaacgtgtgttcattgtttgcg-tttttcgtatctttattcttttgaaccgga-ttgctgttctaaca |
35052265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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