View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190-Insertion-3 (Length: 492)
Name: NF5190-Insertion-3
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 472
Target Start/End: Original strand, 742210 - 742653
Alignment:
| Q |
7 |
acattttcctggaaaagtccactttggaggatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtcca |
106 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742210 |
acattttcctg--aaagtccactttggag-atgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtcca |
742306 |
T |
|
| Q |
107 |
tcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742307 |
tcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttc |
742406 |
T |
|
| Q |
207 |
ttctcacaacaactctgttaattgtgcaacaaacctgaaaatttaattcagaataagtgaatgagacatgagatgcatattttgaacgttaaagactata |
306 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742407 |
ttctcacaac--ttctgttaattgtgcaacaaacctgaaaatttaattcagaataagtgaatgagacatgagatgcatattttgaacgttaaagactata |
742504 |
T |
|
| Q |
307 |
agtctaaactagaattgnnnnnnnccaatgatgtcttcaatcttaggttgaattgaccgacatttgtacgtagctcttatttcacatggacaaaacactt |
406 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
742505 |
agtctaaa-----------------caatgatgtcttcaatcttaggttgaattgaccgacatttgtagctcttaattatttcacatggacaaaacactt |
742587 |
T |
|
| Q |
407 |
accctggtgctgcatcaatcaatcttgacacatggtgttgttccatgtactccgacatgttcattc |
472 |
Q |
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| T |
742588 |
accctggtgctgcatcaatcaatctggacacatagtgttgttccatgtactccgacatgttcattc |
742653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 42449340 - 42449659
Alignment:
| Q |
7 |
acattttcctggaaaagtccactttggaggatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtcca |
106 |
Q |
| |
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||||||||||| ||||||||||| ||| |||||| || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
42449340 |
acattttcctg--aaagtccacttaagag-atgatcggcaccaaggttcgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtcca |
42449436 |
T |
|
| Q |
107 |
tcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggccttc |
206 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
42449437 |
tcagttaaacttccatcctctaagatataaagtaatttgttgattactgaagtatgtgctttctccacttcttccaaaagtagcacactgtttggccttc |
42449536 |
T |
|
| Q |
207 |
ttctcacaacaactctgttaattgtgcaacaaacctgaaaatttaattcagaataagtgaatgagacatgagatgcatattttgaac---------gtta |
297 |
Q |
| |
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|||||||||| ||||||||| || ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||| |||| |
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| T |
42449537 |
ttctcacaac--ttctgttaatcgtccaacaaacctgaaaa-tcaattcaaaataagtgaatgagacatgagatgcatatttcgaactcaagataagtta |
42449633 |
T |
|
| Q |
298 |
aagactataagtctaaactagaattg |
323 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
42449634 |
aagactataagtctaaactagaattg |
42449659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 42449840 - 42449909
Alignment:
| Q |
403 |
acttaccctggtgctgcatcaatcaatcttgacacatggtgttgttccatgtactccgacatgttcattc |
472 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
42449840 |
acttactctggtgctgcatcaatcaatcttgacagatagtgttgttccatgtactccgacatgttcattc |
42449909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 740117 - 740319
Alignment:
| Q |
7 |
acattttcctggaaaagtccactttggaggatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgta-----aaatccacagttctgcctt |
101 |
Q |
| |
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||||||||||| ||||||||||| |||| ||| || | |||||||| ||||||||||||| ||| |||||| || ||||||||||||||||||| |
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| T |
740117 |
acattttcctg--aaagtccacttaggag-atgctcggaaccaaggtttgaggtcatgataatgactgtgttcctatcctaaaatccacagttctgcctt |
740213 |
T |
|
| Q |
102 |
gtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttgg |
201 |
Q |
| |
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|||||||||||| ||||||| | ||||| | ||| || |||| | |||||| ||||||||||||||||||| || ||||||| |||| ||| ||| |
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| T |
740214 |
gtccatcagttagcctcccataatttaagacttcaagcagagtgtttaatacagatatatgtgctttctccacttgctctaaaagtatcacactgtgtgg |
740313 |
T |
|
| Q |
202 |
ccttct |
207 |
Q |
| |
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|||||| |
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| T |
740314 |
ccttct |
740319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 42449743 - 42449774
Alignment:
| Q |
376 |
gtagctcttatttcacatggacaaaacactta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
42449743 |
gtagctcttatttcacatggacaaaacactta |
42449774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 188
Target Start/End: Complemental strand, 10046735 - 10046583
Alignment:
| Q |
36 |
gatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatata |
135 |
Q |
| |
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||||||| ||||| ||||| ||||||||||||| ||| |||||| |||||||||||||||| ||||| ||||||||||| || || || |||| || | |
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| T |
10046735 |
gatgatcggcgccgaggtttgaggtcatgataatgactgtgttcctaaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttg |
10046636 |
T |
|
| Q |
136 |
aagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagta |
188 |
Q |
| |
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||| || |||||| |||||| ||||||||||||| ||||| || ||||||| |
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| T |
10046635 |
aagcagagtgttgaatacagatgtatgtgctttctctacttcatcaaaaagta |
10046583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 45468047 - 45467984
Alignment:
| Q |
403 |
acttaccctggtgctgcatcaatcaatcttgacacatggtgttgttccatgtactccgacatgt |
466 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| ||| ||||||||||||||| |||||||||| |
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|
| T |
45468047 |
acttaccctggtggtgcaccaatcaatcttgatacagagtgttgttccatgtattccgacatgt |
45467984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 45468396 - 45468309
Alignment:
| Q |
36 |
gatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatc |
123 |
Q |
| |
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|||| ||||| |||||||| ||||||||||| | || ||||| ||||||||||||||||||||||||| ||||| || |||||||| |
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| T |
45468396 |
gatgctcagcaccaaggttagaggtcatgatgatcacagtgtttctaaaatccacagttctgccttgtccgtcagtcaacctcccatc |
45468309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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