View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5190-Insertion-5 (Length: 563)
Name: NF5190-Insertion-5
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190-Insertion-5 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0146 (3 HSPs) |
| | |
|
| [»] scaffold0585 (2 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0203 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 436
Target Start/End: Complemental strand, 20416094 - 20415665
Alignment:
| Q |
9 |
taccttcatcaaatttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaagc |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | | | |||| |
|
|
| T |
20416094 |
taccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctttaactcacgagggaaagcaaga |
20415995 |
T |
|
| Q |
109 |
aaatgaagaagttttttctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactca |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||| |
|
|
| T |
20415994 |
aaatggagaagttttttctcaacaagtagaaaacagtcatgttctttggaaaaatgattatgtctcaaaatcacaagaagaaaaatttctacatagctca |
20415895 |
T |
|
| Q |
209 |
cttcaattttatgcaggtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaacatatn |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20415894 |
attcaattttatgcaggtttggatttgaggtcaaatcctcttgaagagggggagaatgatgagatcaagagatcattaagcatgtggaaggaaacatata |
20415795 |
T |
|
| Q |
309 |
nnnnnntgaatattttatt-catttttaattccaaacaagcatgttattttcctagtaaaataatttggctatt-atacaaatggtcaattattagtact |
406 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| || |
|
|
| T |
20415794 |
aaaaaatgaatattttattccttttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattagcaca |
20415695 |
T |
|
| Q |
407 |
gttatggttttaataaaataattgacagca |
436 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
|
|
| T |
20415694 |
gttatggttctaataaaataattggcagca |
20415665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 402
Target Start/End: Original strand, 20417048 - 20417445
Alignment:
| Q |
7 |
agtaccttcatcaaatttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaa |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | | ||||| |
|
|
| T |
20417048 |
agtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctttaactcacgagggaaaccaa |
20417147 |
T |
|
| Q |
107 |
gcaaatgaagaagttttttctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcact |
206 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| || |
|
|
| T |
20417148 |
gaaaatggagaagttttttctcaacaagtagaaaacagtcatgttctttggaaaaatgattatgtctcaaaatcacaagaagaaaaatttctacatagct |
20417247 |
T |
|
| Q |
207 |
cacttcaattttatgcaggtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaacata |
306 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20417248 |
cagttcaattttatgcaggtttggatttgaggtcaaatcctcttgaagacggggagaatgatgagatcaagagcttattaagcatgtggaaggaaacata |
20417347 |
T |
|
| Q |
307 |
tnnnnnnntgaatattttattca-tttttaattccaaacaagcatgttattttcctagtaaaataatttggctatt-atacaaatggtcaattattag |
402 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
20417348 |
taaaaaaatgaatattttattcattttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattag |
20417445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 20418668 - 20418372
Alignment:
| Q |
7 |
agtaccttcatcaaatttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaa |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |
|
|
| T |
20418668 |
agtaccttcatcaaagttggtatgtgtagttaaatgttggggttcttctaatattttgcaatctcctaacctttcttcttcaactcatgaaagaaaccaa |
20418569 |
T |
|
| Q |
107 |
gcaaatgaagaagttttttctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcact |
206 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||| || ||||||||||||| |||||||| |||| || ||||| || |||||||||||||||||| |
|
|
| T |
20418568 |
gcaaatgaagaaattttttctcaactagtaaaaaacaatcatgttctttggaaatatgattatttccctaattcacatgggaaaaaaattctacatcact |
20418469 |
T |
|
| Q |
207 |
cacttcaattttatgcaggtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac |
303 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
20418468 |
cacttcaattttatgcaggtttagatttgaggtcaaatccttttgaagagggggagaatgatgagatcaaaagttcactaagcatgtggaaggaaac |
20418372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 265 - 498
Target Start/End: Complemental strand, 20420403 - 20420168
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt-aattccaaacaagcatgttattttcctag |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
20420403 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttattcattttttaattccaaacaagcatgctattttcctag |
20420304 |
T |
|
| Q |
364 |
taaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatcttatg |
462 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| || ||||||||| |||||||||||||| ||||| |||| ||| ||||||||| | ||| |
|
|
| T |
20420303 |
taaaataatttggctattaatccaaatggtcaattattagcacagttatggttctaataaaataattggcagcaagttgtgagtaagtgattatttcatg |
20420204 |
T |
|
| Q |
463 |
gagatataattagcccaaggtgctgattcatgttct |
498 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
20420203 |
gagatgtaattatcccaaggtgctgattcatgttct |
20420168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 265 - 409
Target Start/End: Complemental strand, 30519077 - 30518932
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn-tgaatattttattcatttttaattccaaacaagcatgttattttcctag |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30519077 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaaatgaatattttattcatttttaattccaaacaagcatgttattttcctag |
30518978 |
T |
|
| Q |
364 |
taaaataatttggctattatacaaatggtcaattattagtactgtt |
409 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30518977 |
taaaataatttggctattatacgaatggtcaattattagtactgtt |
30518932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 30518932 - 30518872
Alignment:
| Q |
503 |
tcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagttttg |
563 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518932 |
tcaaaaatgccaataacatgattaatcacgttggcattatggtggttattgttcagttttg |
30518872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 498
Target Start/End: Complemental strand, 20415510 - 20415435
Alignment:
| Q |
423 |
aataattgacagcaggttgcaagttagtgattatcttatggagatataattagcccaaggtgctgattcatgttct |
498 |
Q |
| |
|
|||||||| ||||| |||| ||| ||||||||| | |||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
20415510 |
aataattggcagcaagttgtgagtaagtgattatttcatggagatgtaattatcccaaggtgctgattcatgttct |
20415435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 16711786 - 16711746
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
16711786 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
16711746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 16346381 - 16346085
Alignment:
| Q |
7 |
agtaccttcatcaaatttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaa |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |
|
|
| T |
16346381 |
agtaccttcatcaaagttggtatgtgtagttaaatgttggggttcttctaatattttgcaatctcctaacctttcttctttaactcatgaaggaaaccaa |
16346282 |
T |
|
| Q |
107 |
gcaaatgaagaagttttttctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcact |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||||||||| ||| |||||||| |||| || |||||||| |||||||||||||||||| |
|
|
| T |
16346281 |
gcaaatgaagaagttttttctcaactagtagaaaacaatcatgttctttgaaaatatgattatttccctaattcacaagggaaaaaaattctacatcact |
16346182 |
T |
|
| Q |
207 |
cacttcaattttatgcaggtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac |
303 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
16346181 |
cacttcaattttatgcaggtttagatttgaggtcaaatccttttgaagagggggagaatgatgagatcaaaagttcattaagcatgtggaaggaaac |
16346085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 265 - 498
Target Start/End: Complemental strand, 2310066 - 2309831
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt-aattccaaacaagcatgttattttcctag |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
2310066 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttattcattttttaattccaaacaagcatgctattttcctag |
2309967 |
T |
|
| Q |
364 |
taaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatcttatg |
462 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||| ||||||||||| ||| |
|
|
| T |
2309966 |
taaaataatttggctattaatccaaatggtcaattattagcactgttatggttctaataaaataattggcagcaggttgtgagtaagtgattatctcatg |
2309867 |
T |
|
| Q |
463 |
gagatataattagcccaaggtgctgattcatgttct |
498 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
2309866 |
gagatgtaattatcccaaagtgctgattcatgttct |
2309831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 17237667 - 17237625
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
17237667 |
tgatgagatcaaaagctcattaagtatgtggaaagaaacatat |
17237625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 35870812 - 35870852
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
35870812 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
35870852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 48266730 - 48266770
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
48266730 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
48266770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 265 - 563
Target Start/End: Original strand, 32705629 - 32705933
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnnt--gaatattttattcattttta---attccaaacaagcatgttattttc |
359 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32705629 |
tgatgaaatcaagagctcattaaacatgtggaagaaaacatataaaaaaaaaagaatattttattcatttttattaattccaaacaagcatgttattttc |
32705728 |
T |
|
| Q |
360 |
ctagtaaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatct |
458 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32705729 |
ctagtaaaataatttggctattaatccaaatggtcaattattagtactgttatggttttaataaaataattggcagcaggttgcaagttagtgattatct |
32705828 |
T |
|
| Q |
459 |
tatggagatataattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcag |
558 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32705829 |
catggagatgtaattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttactgttcag |
32705928 |
T |
|
| Q |
559 |
ttttg |
563 |
Q |
| |
|
||||| |
|
|
| T |
32705929 |
ttttg |
32705933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 8105703 - 8105659
Alignment:
| Q |
263 |
aatgatgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
8105703 |
aatgatgtgatcataagttcattaagcatgtggaaggaaacatat |
8105659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 44394130 - 44394170
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
44394130 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
44394170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 47233494 - 47233454
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
47233494 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
47233454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 265 - 563
Target Start/End: Complemental strand, 23144967 - 23144665
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt--aattccaaacaagcatgttattttccta |
362 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
23144967 |
tgatgagatcaagagctcattaaacatgtggaaggaaacatataaataa-tgaatattttattcatttttttaattccaaacaagcatgctattttccta |
23144869 |
T |
|
| Q |
363 |
gtaaaataat--ttggctattatac-aaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatctt |
459 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| || || |||| ||||||||||||||| |
|
|
| T |
23144868 |
gtaaaataatatttggctattaaaccaaatggtcaattattagtattgttatggttttaataaaataatttgcaacaagttgtgagttagtgattatctc |
23144769 |
T |
|
| Q |
460 |
atggagatataattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagt |
559 |
Q |
| |
|
||| |||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| || |||| |||||||| |
|
|
| T |
23144768 |
atgaagatgtaatcagctcaaggtgctgattcatgttctcggctcaaaaaggccaataaaatgattaatcacattggcattatagtagttactgttcagt |
23144669 |
T |
|
| Q |
560 |
tttg |
563 |
Q |
| |
|
|||| |
|
|
| T |
23144668 |
tttg |
23144665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 26047981 - 26048058
Alignment:
| Q |
225 |
gtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac |
303 |
Q |
| |
|
|||||||||| ||| |||||| |||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
26047981 |
gtttggattt-agggcaaatcctctttaagagggggagaatgatgaaatcaagagttcactaagcatgtggaaggaaac |
26048058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 20172419 - 20172459
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
20172419 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
20172459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 152 - 300
Target Start/End: Complemental strand, 22063125 - 22062977
Alignment:
| Q |
152 |
ctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcaggtttggatttgaggtcaaatcatcttg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22063125 |
ctttggaaaaatgattatgtcccaaaatcacaaggagaaaaatttctacatagctcacttcaattttatgcaggtttggatttgaggtcaaatcctcttg |
22063026 |
T |
|
| Q |
252 |
aagagggggagaatgatgagatcaagagctcattaagcatgtggaagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
22063025 |
aagagggggagaatgatgagatcaagagcttattaaacatgtggaagga |
22062977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 20121055 - 20121091
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaa |
301 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20121055 |
tgatgagatcataagctcattaagcatgtggaaggaa |
20121091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 265 - 409
Target Start/End: Complemental strand, 6051016 - 6050871
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn-tgaatattttattcatttttaattccaaacaagcatgttattttcctag |
363 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6051016 |
tgatgagatcaaaagctcattaagcatgtggaaggaaacatataaaaaaaatgaatattttattcatttttaattccaaacaagcatgttattttcctag |
6050917 |
T |
|
| Q |
364 |
taaaataatttggctattatacaaatggtcaattattagtactgtt |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6050916 |
taaaataatttggctattagacaaatggtcaattattagtactgtt |
6050871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 23732543 - 23732459
Alignment:
| Q |
152 |
ctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcaggtttggatttga |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23732543 |
ctttggaaaaatgattatgtcccaaaatcaaaaggagaaaaatttctacatagctcacttcaattttatgcaggtttggatttga |
23732459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 6050871 - 6050811
Alignment:
| Q |
503 |
tcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagttttg |
563 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6050871 |
tcaaaaatgccaataacatgattaatcacgttggcattatggtggctattgttcagttttg |
6050811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 300
Target Start/End: Complemental strand, 23736393 - 23736358
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23736393 |
tgatgagatcaagagctcattaagcatgtggaagga |
23736358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 15408638 - 15408676
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaac |
303 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
15408638 |
tgatgagatcaaaagttcattaagcatgtggaaggaaac |
15408676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 34356 - 34652
Alignment:
| Q |
7 |
agtaccttcatcaaatttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaa |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||| ||| | |||||||| |||| |
|
|
| T |
34356 |
agtaccttcatcaaagttggtatgtgtagttaattgttggaattcttctgatatttttaaatctcctaacctttcttctttgagtcatgaagggaaccat |
34455 |
T |
|
| Q |
107 |
gcaaatgaagaagttttttctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcact |
206 |
Q |
| |
|
| ||||| |||| ||| |||| ||||| |||| | | || | |||||| |||| | ||||| | ||||||||| ||||||| |||||||| ||| |
|
|
| T |
34456 |
gtgaatgatgaagaatttcctcatcaagttaaaaaaaattatgagcaatggaaatatgagtttgtccaagaatcacaagaagaaaaatttctacataact |
34555 |
T |
|
| Q |
207 |
cacttcaattttatgcaggtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac |
303 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| || ||||| |||||||||||||| |
|
|
| T |
34556 |
cacttccattatatgcaggtttggatttgaggacaaattctcttgaagagggggggaatgatgagatcatgagttctttaagtatgtggaaggaaac |
34652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 8642 - 8911
Alignment:
| Q |
7 |
agtaccttcatcaaatttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaa |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||| ||| | |||||||| |||| |
|
|
| T |
8642 |
agtaccttcatcaaagttggtatgtgtagttaattgttggaattcttctgatatttttaaatctcctaacctttcttctttgagtcatgaagggaaccac |
8741 |
T |
|
| Q |
107 |
gcaaatgaagaagttttttctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcact |
206 |
Q |
| |
|
| |||||||||| || |||| ||||| |||| | | || | ||||||||||| | ||||| | ||||| ||| ||||||| |||||||| ||| |
|
|
| T |
8742 |
gtgaatgaagaagaagttcctcatcaagttaaaaaaaattatgaccaatggaaaaatgagtttgtccaagaatcataagaagaaaaatttctacataact |
8841 |
T |
|
| Q |
207 |
cacttcaattttatgcaggtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaa |
276 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8842 |
cacttccattttatgtaggtttggatttgaggtcaaatcctcttgaagaggaggagaatgatgagatcaa |
8911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 5884 - 5926
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
5884 |
tgatgagatcaaaagctcattaagtatgtggaaagaaacatat |
5926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 16532 - 16574
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
16532 |
tgatgagatcaaaagctcattaagtatgtggaaagaaacatat |
16574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 265 - 382
Target Start/End: Complemental strand, 20265143 - 20265026
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcatttttaattccaaacaagcatgttattttcctagt |
364 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20265143 |
tgatgagatcaagagctcgttaagcatgtggaaggaaacatataaaaaaataaatattttattcatttttaattccaaacaaacatgttattttcctagt |
20265044 |
T |
|
| Q |
365 |
aaaataatttggctatta |
382 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20265043 |
aaaataatttggctatta |
20265026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 1393353 - 1393422
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
1393353 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttatttattttt |
1393422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 14874131 - 14874093
Alignment:
| Q |
263 |
aatgatgagatcaagagctcattaagcatgtggaaggaa |
301 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14874131 |
aatgatgagatcataagctcattaagcatgtggaaggaa |
14874093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 2500315 - 2500275
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
2500315 |
atgagatcaaaagttcactaagcatgtggaaggaaacatat |
2500275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 20036711 - 20036751
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
20036711 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
20036751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 46092774 - 46092814
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
46092774 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
46092814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 53830177 - 53830137
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
53830177 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
53830137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0585
Description:
Target: scaffold0585; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 265 - 397
Target Start/End: Complemental strand, 1590 - 1455
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn--tgaatattttattcattttt-aattccaaacaagcatgttattttcct |
361 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
1590 |
tgataagatcaagagctcattaagcatgtggaaggaaacatacaaaaaacaatgtttattttattcattttttaattccaaacaagcatgctattttcct |
1491 |
T |
|
| Q |
362 |
agtaaaataatttggctattatacaaatggtcaatt |
397 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1490 |
agtaaaataatttggctattaatccaatggtcaatt |
1455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 319 - 397
Target Start/End: Complemental strand, 3943 - 3864
Alignment:
| Q |
319 |
tattttattcattttt-aattccaaacaagcatgttattttcctagtaaaataatttggctattatacaaatggtcaatt |
397 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3943 |
tattttattcattttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaatggtcaatt |
3864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 136051 - 136093
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
136051 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
136093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 22581 - 22621
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
22581 |
atgagatcaagaggtcactaagcatgtggaaggaaacatat |
22621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 54536 - 54574
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaaac |
303 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
54536 |
tgatgagatcaaaagttcattaagcatgtggaaggaaac |
54574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0203 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0203
Description:
Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 2375 - 2339
Alignment:
| Q |
265 |
tgatgagatcaagagctcattaagcatgtggaaggaa |
301 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2375 |
tgatgagatcataagctcattaagcatgtggaaggaa |
2339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 34596115 - 34596159
Alignment:
| Q |
263 |
aatgatgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||| ||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
34596115 |
aatgatgtgatcatgaactcattaagtatgtggaaggaaacatat |
34596159 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 36991517 - 36991557
Alignment:
| Q |
267 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
307 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
36991517 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
36991557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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