View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190-Insertion-8 (Length: 431)
Name: NF5190-Insertion-8
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 46502542 - 46502734
Alignment:
| Q |
8 |
ttttgaataaacaataattttcatgctaaatatgtgaaaatttcacacaataatcattaaatctatcaaaaaatttaacacattagtgtcttctttgtga |
107 |
Q |
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| T |
46502542 |
ttttgaataaacaataattttcatgctaaatatgtgaaaatttcacacaataatccttaaatctatcaaaaattttaacacattagtgtcttctttgtga |
46502641 |
T |
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| Q |
108 |
taattttatgtattgaccaataaatttttagtaaaacttttttatttgaataagccaacagatttttatcaaaacaaaacaaactaactaact |
200 |
Q |
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| T |
46502642 |
taattttatgtattgaccaataaatttttactaaaacttttttatttgaataagccaacagatttttattaaaacaaaacaaactaactaact |
46502734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 219 - 431
Target Start/End: Original strand, 46502760 - 46502973
Alignment:
| Q |
219 |
atgtattgatcggactttatttaacttctaataaactcatcagggtctctttcatctaagaatcaaagggataacaaaaactaactaactaaaaacacat |
318 |
Q |
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| T |
46502760 |
atgtattggtcagactttacttagcttccaataaactcatcagggtctctttcatctaagaatcaaagggataacaaaaactagccaactaaaaacacat |
46502859 |
T |
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| Q |
319 |
gacttgagaattcaaatgacttnnnnnnnncaaagacaaatttacatatgattttgtaattttaatatatgtatgtac-tatttaacatttaaggatgaa |
417 |
Q |
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| T |
46502860 |
gacttgagaattcaaatgacttaaaaaaaacaaagacaaatttacatatgattttgtaattttaatatatgtatgtacttatttaacatttaaggatgaa |
46502959 |
T |
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| Q |
418 |
aaagactatttagc |
431 |
Q |
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| T |
46502960 |
aaagactatttagc |
46502973 |
T |
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