View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_20 (Length: 368)
Name: NF5190_high_20
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 4857693 - 4858004
Alignment:
| Q |
11 |
catagggtctcaaaatgaattacttacttacaaaatttgatgtattaagaatgagggttgtaagctattacttgtattctattaaagtagcattttacaa |
110 |
Q |
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| T |
4857693 |
catagggtctcaaaatgaattacttacttacaaaatttgatgtattaagaatgagggttgtaagctattacttgtattctattaaagtagcattttacaa |
4857792 |
T |
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| Q |
111 |
agattttaacaaagaaataatcatgtcctgagcaaaaaccagatcagctcttaacagtttaagcggttccatgacaaaatcgtttatacatttgttccaa |
210 |
Q |
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| T |
4857793 |
agattttaacaaagaaataatcatgtcctgagcgaaaaccagatcagctcttaacagtttatgcggttccatgagaaaatcgtttatacatttgttccaa |
4857892 |
T |
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| Q |
211 |
gaagctggtccgtgcggctataattgaatgattttaacaactatgttcaattatttgttagatttgcaagagaatagggcacctagaaccaaattgtgtc |
310 |
Q |
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| T |
4857893 |
gaagctggtccgagcggctataattgaacgattttaacaactatgttcaattatttgttagatttgcaagagaatagggcacctagaacaaacttgtgtc |
4857992 |
T |
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| Q |
311 |
ctacaaaattta |
322 |
Q |
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| T |
4857993 |
ctacaaaattta |
4858004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 326
Target Start/End: Complemental strand, 5176867 - 5176776
Alignment:
| Q |
235 |
tgaatgattttaacaactatgttcaattatttgttagatttgcaagagaatagggcacctagaaccaaattgtgtcctacaaaatttacagc |
326 |
Q |
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|||| |||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||| |||||||| |
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| T |
5176867 |
tgaacgattttaacaactatgctcaattatttgtttgattttcaagagaatagtgcacctagaacaaacttgtgtcctacaaattttacagc |
5176776 |
T |
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