View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_21 (Length: 367)
Name: NF5190_high_21
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 20951841 - 20952025
Alignment:
| Q |
18 |
attttgtcacaatataaaggtttgcagtgtaaccgcaacaacaatttaaaaccatggagtgtaccttagttatattgggaaccaaagaacgcaatgcgta |
117 |
Q |
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| T |
20951841 |
attttgccacaatataaaggtttgcagtgtaa----aacaacaatttaaaaccatggagtgtaccttagttatattgggaaccaaagaacgcaatgcgta |
20951936 |
T |
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| Q |
118 |
aagcttatccttcattcggcttcgcctcctcctctcagaaaccaaagtcttggatctatcatttttcgactttggcttagtatcaccac |
206 |
Q |
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| T |
20951937 |
aagcttatccttcattcggcttcgcctcctcctctcagaaaccaaagtcttggatctatcatttttcgactttggcttagtatcaccac |
20952025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 243 - 344
Target Start/End: Original strand, 20952062 - 20952163
Alignment:
| Q |
243 |
caggagaggagtagttatcaccatcattttctactcttatttcccccttagcttccccatcaaagcaagaaaaagaaccaagtgaagaagtaggatcaaa |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
20952062 |
caggagaggagtagttatcaccatcattttctactcttaattcctccttagcttctccatcaaaacaagagaaagaaccaagtgaagaagtaggatcaaa |
20952161 |
T |
|
| Q |
343 |
ag |
344 |
Q |
| |
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|| |
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| T |
20952162 |
ag |
20952163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 20947728 - 20947844
Alignment:
| Q |
86 |
gttatattgggaaccaaagaacgcaatgcgtaaagcttatccttcattcggcttcgcctcctcctctcagaaaccaaagtcttggatctatcatttttcg |
185 |
Q |
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| T |
20947728 |
gttatgttgggaaccaaagaacgtaatgcataaatcttatccttcatttgaccttgcctcctcctcgcataaaccaaagtcttggatctatcatttctcg |
20947827 |
T |
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| Q |
186 |
actttggcttagtatca |
202 |
Q |
| |
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||||||||| |||||| |
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| T |
20947828 |
gctttggcttggtatca |
20947844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 3668043 - 3667994
Alignment:
| Q |
18 |
attttgtcacaatataaaggtttgcagtgtaaccgcaacaacaatttaaa |
67 |
Q |
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||||| |||||||||||||||||| |||||||||||| | ||||||||| |
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| T |
3668043 |
attttatcacaatataaaggtttgtagtgtaaccgcacccgcaatttaaa |
3667994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 35474013 - 35473909
Alignment:
| Q |
79 |
taccttagttatattgggaaccaaagaacgcaatgcgtaaagcttatccttcattcggcttcgcctcctcctctcagaaaccaaagtcttggatctatca |
178 |
Q |
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|||||| || || ||||||||||||||||||||||| ||||||||||||||||| | || || |||||| |||||||||| | ||||||||| |||||| |
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| T |
35474013 |
tacctttgtaatgttgggaaccaaagaacgcaatgcataaagcttatccttcatcctgcctctcctccttctctcagaaatgagagtcttggacctatca |
35473914 |
T |
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| Q |
179 |
ttttt |
183 |
Q |
| |
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|||| |
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|
| T |
35473913 |
gtttt |
35473909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 38772160 - 38772117
Alignment:
| Q |
25 |
cacaatataaaggtttgcagtgtaaccgcaacaacaatttaaaa |
68 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38772160 |
cacaatataaaggtttgcagcgtaaccgcaacaacaatttaaaa |
38772117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 18081320 - 18081272
Alignment:
| Q |
25 |
cacaatataaaggtttgcagtgtaaccgcaacaacaatttaaaaccatg |
73 |
Q |
| |
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||||||||||||| || ||||||| |||||| |||||||||||||||| |
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| T |
18081320 |
cacaatataaaggaatgtagtgtaatcgcaaccacaatttaaaaccatg |
18081272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 5939741 - 5939787
Alignment:
| Q |
27 |
caatataaaggtttgcagtgtaaccgcaacaacaatttaaaaccatg |
73 |
Q |
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|||||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
5939741 |
caatataaagatttgcagtgtaaccgcgaccgcaatttaaaaccatg |
5939787 |
T |
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