View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_22 (Length: 356)
Name: NF5190_high_22
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 118 - 328
Target Start/End: Complemental strand, 1591282 - 1591072
Alignment:
| Q |
118 |
tttgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1591282 |
tttgctatgactaaggagaagattaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
1591183 |
T |
|
| Q |
218 |
cacttgctccacaattttatactcaagaagagttagcacaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgttcgcca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1591182 |
cacttgctccacaattttatactcaagaagagttagcagaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgtttgcca |
1591083 |
T |
|
| Q |
318 |
agaaacaatgg |
328 |
Q |
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||||||||||| |
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| T |
1591082 |
agaaacaatgg |
1591072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 1591085 - 1591014
Alignment:
| Q |
285 |
ccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaagtggatgtcgtgaataaaaagaaaag |
356 |
Q |
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| T |
1591085 |
ccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagatgtcgtgaataaaaagaaaag |
1591014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 1586769 - 1586821
Alignment:
| Q |
279 |
tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag |
331 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
1586769 |
tgttgtccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaag |
1586821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 1586799 - 1586851
Alignment:
| Q |
279 |
tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag |
331 |
Q |
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||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1586799 |
tgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaag |
1586851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 1586913 - 1586965
Alignment:
| Q |
279 |
tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag |
331 |
Q |
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||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1586913 |
tgttcaccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaag |
1586965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 1586883 - 1586935
Alignment:
| Q |
279 |
tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag |
331 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
1586883 |
tgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaag |
1586935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 1587024 - 1587075
Alignment:
| Q |
279 |
tgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaa |
330 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
1587024 |
tgttgtccaagaaacaatagaaggagatcatgttcgccaaaaaacaatggaa |
1587075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 331
Target Start/End: Original strand, 1586708 - 1586791
Alignment:
| Q |
245 |
aagagttagcacaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgttcgccaagaaacaatggaag |
331 |
Q |
| |
|
||||||||||||||||| ||||| || |||||| | || |||||||||||||||| ||| ||||| ||||||||||||||||| |
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| T |
1586708 |
aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggag---atgttgtccaagaaacaatggaag |
1586791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 118 - 330
Target Start/End: Complemental strand, 19271077 - 19270865
Alignment:
| Q |
118 |
tttgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
19271077 |
tttgctatgactaaggagaagatcaacgaatacatggaaatagcgaaaacagcgccattcaaccctcaccataattttgcttggcaatgcgtcatagcta |
19270978 |
T |
|
| Q |
218 |
cacttgctccacaattttatactcaagaagagttagcacaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgttcgcca |
317 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19270977 |
cacttgctccccaattttatactcaagaagagttggcacaaataaagaaactctatcaacgtgttctccaagaaacaaaggaacgagatcatgttcgcca |
19270878 |
T |
|
| Q |
318 |
agaaacaatggaa |
330 |
Q |
| |
|
||||||||||||| |
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| T |
19270877 |
agaaacaatggaa |
19270865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 120 - 293
Target Start/End: Complemental strand, 39616530 - 39616357
Alignment:
| Q |
120 |
tgctatgactaaggagaagatcaaagaatacatggaaatagcgaaaacagcgccattcaacccttaccataattttacttggcaatgcgtcatagctaca |
219 |
Q |
| |
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|||||| |||| |||||||||||||| ||||||||||| ||| ||||| |||||| |||||| || |||||| ||| ||||||||||||| ||||||| | |
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| T |
39616530 |
tgctatcactagggagaagatcaaaggatacatggaaaaagcaaaaacggcgccactcaacctttcccataactttgcttggcaatgcgtgatagctata |
39616431 |
T |
|
| Q |
220 |
cttgctccacaattttatactcaagaagagttagcacaaataaagaaactctatcaacgtgttctccaagaaac |
293 |
Q |
| |
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| |||||||||||||||| || ||||||||||| ||||||||||||||| | ||||| ||||||||||||||| |
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| T |
39616430 |
cgtgctccacaattttattctgaagaagagttaacacaaataaagaaacacagtcaacttgttctccaagaaac |
39616357 |
T |
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