View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_25 (Length: 344)
Name: NF5190_high_25
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 31034676 - 31034976
Alignment:
| Q |
11 |
agaatataagcaaataatacctagagaaagactccatgatcctaccaccaaaacccttctgaggtccacaatggatgaaaatgaaaaaacaaagaaaccc |
110 |
Q |
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| T |
31034676 |
agaagataagcaaagaatacctagagaaagactcaatgatcctaccaccaaaacccttctaagggctacaatggatgaaaatgaaaaaacaaagaaaccc |
31034775 |
T |
|
| Q |
111 |
ttgccattaggtgtaagagactatttgccaagaacatttcaatttcaaagagcgtttaactttgtgtgcaggttaccatttgttggagaagat---tccc |
207 |
Q |
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| T |
31034776 |
ttgccattaggtgtaagagactatttgccaagaacatttcaa------agagcgtttaactttgtgtgcagggaaccatttgttggagaagatcattccc |
31034869 |
T |
|
| Q |
208 |
atttcgttaatataattcttccatggaggaaattttcgcagcaatcgatactcgctgttgtgaaagtgactcaaaattggtttctgaaactgccaaaatc |
307 |
Q |
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||||||||||||||||||||||| |||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31034870 |
atttcgttaatataattcttccacggaggaaattttcgcaactatggatactcgctgttgggaaagtgactcaaaattggtttctgaaactgccaaaatc |
31034969 |
T |
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| Q |
308 |
aggggcc |
314 |
Q |
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|||||| |
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| T |
31034970 |
gggggcc |
31034976 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 16455973 - 16455929
Alignment:
| Q |
263 |
tgttgtgaaagtgactcaaaattggtttctgaaactgccaaaatc |
307 |
Q |
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|||||| |||||||||||||||| ||||||| ||||||||||||| |
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| T |
16455973 |
tgttgtaaaagtgactcaaaattagtttctggaactgccaaaatc |
16455929 |
T |
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