View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_3 (Length: 561)
Name: NF5190_high_3
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Complemental strand, 41811408 - 41810874
Alignment:
| Q |
17 |
attttgtctgccagctccaacttctcctgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttactttttgctttaaag |
116 |
Q |
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| T |
41811408 |
attttgtctgccagctccaacttctcctgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttactttttgctttaaag |
41811309 |
T |
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| Q |
117 |
tgttcaactcacagtctttggctcttaactgttcttcaactacactcttctggttgtctatgtaatccatctccaatttcagcttttcgatcgactgacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811308 |
tgttcaactcacagtctttggctcttaactgttcttcaactacactcttctggttgtctatgtaatccatctccaatttcagcttttcgatcgactgacc |
41811209 |
T |
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| Q |
217 |
taatttttgcatctcattatacatggaaagctgatcatctttatgaatcttaatttgctccttgcaggtagatattacaaccaaacattcttcctctgcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811208 |
taatttttgcatctcattatacatggaaagctgatcatctttatgaatcttaatttgctccttgcaggtagatattacaaccaaacattcttcctctgcc |
41811109 |
T |
|
| Q |
317 |
ttattaagcttatcttggaaaactaataactccgattctctctcatctgatattttctctaattttgctattctgtcgtgtagctccaacttctgctgtg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811108 |
ttattaagcttatcttggaaaactaataactccgattctctctcatctgatattttctctaattttgctattctgtcgtgtagctccaacttctgctgtg |
41811009 |
T |
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| Q |
417 |
tcagatgactaatcacttggatgttagcctttatttgctcttcatcttcgctacttttgctctttatagtgcccatctccaattccagactccttatacg |
516 |
Q |
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| T |
41811008 |
tcagatgactaatcacttggatgttggcctttatttgctcttcatcttcgctacttttgctctttatagtgcccatctccaattccagactccttatatg |
41810909 |
T |
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| Q |
517 |
catcgttaaattttctttatcttccataagtctct |
551 |
Q |
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| T |
41810908 |
catcgttaaattttctttatcttccgtaagtctct |
41810874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 41798117 - 41797942
Alignment:
| Q |
17 |
attttgtctgccagctccaacttctcctgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttactttttgctttaaag |
116 |
Q |
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||||||||||| |||||||| || ||||||||||||||| ||| | ||| | || |||| | ||||||||| ||| |||||| ||||||||| ||||| |
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| T |
41798117 |
attttgtctgctagctccaaattttcctgtgccagtttactgatctcatcccggttagcactgatttgctttgcgtattcactttctttttgctctaaag |
41798018 |
T |
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| Q |
117 |
tgttcaactcacagtctttggctcttaactgttcttcaactacactcttctggttgtctatgtaatccatctccaa |
192 |
Q |
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|||| ||||||| ||||||||||||||| |||||||||||| ||||||||||| || |||| |||||| |||||| |
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| T |
41798017 |
tgtttaactcacggtctttggctcttaattgttcttcaacttcactcttctggctgcgtatggaatccagctccaa |
41797942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 419 - 551
Target Start/End: Complemental strand, 41797817 - 41797685
Alignment:
| Q |
419 |
agatgactaatcacttggatgttagcctttatttgctcttcatcttcgctacttttgctctttatagtgcccatctccaattccagactccttatacgca |
518 |
Q |
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|||||||| |||||||||| ||| | | ||||||||||||| |||| |||| |||||||||| || || | |||||||| ||||||| || |||| || |
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| T |
41797817 |
agatgactgatcacttggacgttggtccttatttgctcttcgtctttgctatttttgctcttaatggtactcatctccagttccagattctttatctgcc |
41797718 |
T |
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| Q |
519 |
tcgttaaattttctttatcttccataagtctct |
551 |
Q |
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| T |
41797717 |
tggttaaattttctctgtcttccataagtctct |
41797685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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