View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_31 (Length: 301)
Name: NF5190_high_31
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 40280010 - 40279727
Alignment:
| Q |
1 |
aggaacgagatgtgtgatcgtgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaaccaatgcatccattgatga |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40280010 |
aggaacgagatgtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatccattgatga |
40279911 |
T |
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| Q |
101 |
caaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaacatgctgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40279910 |
caaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaacatgctgatat |
40279811 |
T |
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| Q |
201 |
acacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgcccttcct |
284 |
Q |
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| T |
40279810 |
acacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgcccttcct |
40279727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 40458340 - 40458623
Alignment:
| Q |
1 |
aggaacgagatgtgtgatcgtgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaaccaatgcatccattgatga |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40458340 |
aggaacgagatgtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatccattgatga |
40458439 |
T |
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| Q |
101 |
caaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaacatgctgatat |
200 |
Q |
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| T |
40458440 |
caaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaacatgctgatat |
40458539 |
T |
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| Q |
201 |
acacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgcccttcct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458540 |
acacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgcccttcct |
40458623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 40284971 - 40284698
Alignment:
| Q |
1 |
aggaacgagatgtgtgatcgtgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaaccaatgcatccattgatga |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||| |||||||| |||||||||||||||||| |
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| T |
40284971 |
aggaatgagatgtgtgatcgtgcacccggtgaatggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcatccattgatga |
40284872 |
T |
|
| Q |
101 |
caaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaacatgctgatat |
200 |
Q |
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||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
40284871 |
caaagaagagaaacatcaattggttgttcttgctgttaggtcaaatgatagggtgttgcaagctcgatcaattgaagtatttctgcaaacatgctgatat |
40284772 |
T |
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| Q |
201 |
acacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaaca |
274 |
Q |
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| T |
40284771 |
acacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaaca |
40284698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 39600588 - 39600421
Alignment:
| Q |
67 |
tgtggacaagagaaaccaatgcatccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttg |
166 |
Q |
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||||||||||| || | ||| ||||| | || ||||||||||||| || ||||||||||| ||| |||||||||| ||||| || |||||||| ||| |
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| T |
39600588 |
tgtggacaagaaaacgctatgaatccaataatcacaaagaagagaacaatcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttc |
39600489 |
T |
|
| Q |
167 |
atcaattgaagtatttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgatttat |
234 |
Q |
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| T |
39600488 |
aacatttgaaatatttctgcaaacatagcaatattcataggactggtgccaaaaatcgtttgatttat |
39600421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 188
Target Start/End: Original strand, 39781385 - 39781506
Alignment:
| Q |
67 |
tgtggacaagagaaaccaatgcatccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttg |
166 |
Q |
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||||||||||| || | ||| ||||| | || ||||||||||||| || ||||||||||||||| | |||||||| ||||| || |||||||| ||| |
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| T |
39781385 |
tgtggacaagaaaatgctatgaatccaataatcacaaagaagagaaccattaattggttgttcttgttattgggtcagatgattgggtgttgcaagcttc |
39781484 |
T |
|
| Q |
167 |
atcaattgaagtatttctgcaa |
188 |
Q |
| |
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| || ||||||||||||||||| |
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| T |
39781485 |
aacatttgaagtatttctgcaa |
39781506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 25044476 - 25044391
Alignment:
| Q |
103 |
aagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaa |
188 |
Q |
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||||||| ||||| ||||||||||| |||||||||| |||||| | || |||||||||||| | |||||||||||||| ||||| |
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| T |
25044476 |
aagaagaagaatatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaa |
25044391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 25040729 - 25040653
Alignment:
| Q |
112 |
aatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaa |
188 |
Q |
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||||| ||||||||||| || || |||| ||||| || || |||||||| ||||| |||||||||||||| ||||| |
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| T |
25040729 |
aatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaa |
25040653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 28649944 - 28649868
Alignment:
| Q |
112 |
aatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaa |
188 |
Q |
| |
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||||| ||||||||||| ||| ||||||| |||||| | || |||||||||||| | |||||||||||||| ||||| |
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| T |
28649944 |
aatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaacaattgaagtatttttgcaa |
28649868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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