View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_33 (Length: 297)
Name: NF5190_high_33
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 1587490 - 1587223
Alignment:
| Q |
20 |
ctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587490 |
ctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgat |
1587391 |
T |
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| Q |
120 |
atttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnn |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1587390 |
atttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgttttttt |
1587291 |
T |
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| Q |
220 |
ggtttcatcttcttcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc |
287 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587290 |
ggtttgatcttcttcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc |
1587223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 1590733 - 1591000
Alignment:
| Q |
20 |
ctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgat |
119 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1590733 |
ctatgtcggtgagaaaatcgactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgat |
1590832 |
T |
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| Q |
120 |
atttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnn |
219 |
Q |
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| T |
1590833 |
atttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgttttttt |
1590932 |
T |
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| Q |
220 |
ggtttcatcttcttcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc |
287 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
1590933 |
ggtttgatcttcttcgtggtctttggtttaacacttctttccgcataaaacatgctgctaccttcatc |
1591000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 259
Target Start/End: Complemental strand, 1580963 - 1580751
Alignment:
| Q |
47 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
146 |
Q |
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|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||||||||||| ||||| |
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| T |
1580963 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc |
1580864 |
T |
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| Q |
147 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggt |
246 |
Q |
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|||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| || ||| ||||||||||||| |||||||| |
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| T |
1580863 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggt |
1580764 |
T |
|
| Q |
247 |
ttaactcttcttt |
259 |
Q |
| |
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|| |||||||||| |
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| T |
1580763 |
ttcactcttcttt |
1580751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 259
Target Start/End: Original strand, 1603852 - 1604064
Alignment:
| Q |
47 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
146 |
Q |
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|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||||||||||| ||||| |
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| T |
1603852 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc |
1603951 |
T |
|
| Q |
147 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggt |
246 |
Q |
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|||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| || ||| ||||||||||||| |||||||| |
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| T |
1603952 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggt |
1604051 |
T |
|
| Q |
247 |
ttaactcttcttt |
259 |
Q |
| |
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|| |||||||||| |
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| T |
1604052 |
ttcactcttcttt |
1604064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 19270316 - 19270583
Alignment:
| Q |
20 |
ctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||| ||| ||| |||||||||||| |||||| |
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| T |
19270316 |
ctatgtcggtgagaaaatcaactttgacttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgat |
19270415 |
T |
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| Q |
120 |
atttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnn |
219 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||||| || |
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| T |
19270416 |
atatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgttttttt |
19270515 |
T |
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| Q |
220 |
ggtttcatcttcttcgtggtctttggtttaactcttctttccacataagacatgctgctaccttcatc |
287 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||||||||| | | ||||||||| ||||||||||| |
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|
| T |
19270516 |
ggtttcatcttcttcgtgctctttggtttcactcttctttctgcgtgagacatgcttctaccttcatc |
19270583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 39615993 - 39616175
Alignment:
| Q |
27 |
ggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttg |
126 |
Q |
| |
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|||||||||| ||| || | |||||||||| ||||||||||||||| ||||| | || || |||||||||| ||||||| || ||||||||| | || |
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| T |
39615993 |
ggtgagaaaaccaagttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctg |
39616092 |
T |
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| Q |
127 |
atatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc |
209 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||| || | |||||| |||||||| |||||| | | ||||||||||||||| |
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| T |
39616093 |
atatcagtgccattcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatc |
39616175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 39616233 - 39616280
Alignment:
| Q |
228 |
cttcttcgtggtctttggtttaactcttctttccacataagacatgct |
275 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
39616233 |
cttcttcgtggtctttggtttcgttcttctttccgcataagacatgct |
39616280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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