View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_4 (Length: 550)
Name: NF5190_high_4
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 156 - 530
Target Start/End: Original strand, 27090420 - 27090794
Alignment:
| Q |
156 |
ggttttcaaaccacaatcttgtacaaatccttagcgagtacgacgtcctcctctatttggatattgaaatccaatgccttccatagtggcaattgtgttg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090420 |
ggttttcaaaccacaatcttgtacaaatccttagcgagtacgacgtcctcctctatttggatattgaaatccaatgccttccatagtggcaattgtgttg |
27090519 |
T |
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| Q |
256 |
aacattggtctcttgtacacctcttccaatagttgcggtcgatgaagctgcaagctcctatgctgctccatgtttgaatgatttttaggtatcctcgaca |
355 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090520 |
aacattggtctcttgtacacctcttccaatagttgtggtcgatgaagctgcaagctcctatgctgctccatgtttgaatgatttttaggtatcctcgacg |
27090619 |
T |
|
| Q |
356 |
atccgtgatggctcgttccatggccaccacatctacaaccattacaagagtccattttcgggtgcaaaaaatatttggcgaaattacttgtgtctccctc |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090620 |
atccgtgatggctcgttccatggccaccacatctacaaccattacaatagtccattttcgggtgcaaaaaatatttggcgaaattacttgtgtctccctc |
27090719 |
T |
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| Q |
456 |
ttctatatgccttgatctaatgcattgtagattgttatgtttggctctagcttcttctactattgttgggcaatg |
530 |
Q |
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| T |
27090720 |
ttctatatgtcttgatctaatgcattgtagattgttatgtttggctctagcttcttctactattgttgggcaatg |
27090794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 156 - 530
Target Start/End: Complemental strand, 27187881 - 27187507
Alignment:
| Q |
156 |
ggttttcaaaccacaatcttgtacaaatccttagcgagtacgacgtcctcctctatttggatattgaaatccaatgccttccatagtggcaattgtgttg |
255 |
Q |
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| T |
27187881 |
ggttttcaaaccacaatcttgtacaaatccttagcgagtacgacgtcctcctctatttggatattgaaatccaatgccttccatagtggcaattgtgttg |
27187782 |
T |
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| Q |
256 |
aacattggtctcttgtacacctcttccaatagttgcggtcgatgaagctgcaagctcctatgctgctccatgtttgaatgatttttaggtatcctcgaca |
355 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187781 |
aacattggtctcttgtacacctcttccaatagttgtggtcgatgaagctgcaagctcctatgctgctccatgtttgaatgatttttaggtatcctcgacg |
27187682 |
T |
|
| Q |
356 |
atccgtgatggctcgttccatggccaccacatctacaaccattacaagagtccattttcgggtgcaaaaaatatttggcgaaattacttgtgtctccctc |
455 |
Q |
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| T |
27187681 |
atccgtgatggctcgttccatggccaccacatctacaaccattacaatagtccattttcgggtgcaaaaaatatttggcgaaattacttgtgtctccctc |
27187582 |
T |
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| Q |
456 |
ttctatatgccttgatctaatgcattgtagattgttatgtttggctctagcttcttctactattgttgggcaatg |
530 |
Q |
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| T |
27187581 |
ttctatatgtcttgatctaatgcattgtagattgttatgtttggctctagcttcttctactattgttgggcaatg |
27187507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 27090275 - 27090386
Alignment:
| Q |
11 |
cagagatttggataacaaacacaagtttattacacaattatacttgaattaaaaatactttcacacatcaaacattatagagcaaagcaattcaagacaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090275 |
cagagatttggataacaaacacaagtttattacacaattatacttgaattaaaaatactttcacacatcaaacattatagagcaaagcaattcaagacaa |
27090374 |
T |
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| Q |
111 |
cacaacaaacac |
122 |
Q |
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|||||||||||| |
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| T |
27090375 |
cacaacaaacac |
27090386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 27188026 - 27187915
Alignment:
| Q |
11 |
cagagatttggataacaaacacaagtttattacacaattatacttgaattaaaaatactttcacacatcaaacattatagagcaaagcaattcaagacaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27188026 |
cagagatttggataacaaacacaagtttattacacaattatacttgaattaaaaatactttcacacatcaaacattatagagcaaagcaattcaagacaa |
27187927 |
T |
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| Q |
111 |
cacaacaaacac |
122 |
Q |
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|||||||||||| |
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| T |
27187926 |
cacaacaaacac |
27187915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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