View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_40 (Length: 251)
Name: NF5190_high_40
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_40 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 13658959 - 13658718
Alignment:
| Q |
10 |
aagaatatgtgtcactaatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagtttgagctcagaaagtgtgtgagctacaattgaaaa |
109 |
Q |
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| T |
13658959 |
aagaatatgtgtcactgatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagttttagctcagaaagtgtgtgagctacaattgaaaa |
13658860 |
T |
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| Q |
110 |
acttgtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccatttccataaaattttcgatgtaga |
209 |
Q |
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| T |
13658859 |
acttgtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccatttccataaaattttcgatgtaga |
13658760 |
T |
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| Q |
210 |
acgtataacggtggtcccatcaccattggaaagatgatcccg |
251 |
Q |
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| T |
13658759 |
atgtataacggtggtcccatcaccattggaaagatgatcccg |
13658718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 13651470 - 13651229
Alignment:
| Q |
10 |
aagaatatgtgtcactaatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagtttgagctcagaaagtgtgtgagctacaattgaaaa |
109 |
Q |
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| T |
13651470 |
aagaatatgtgtcactgatcatagctgttgttaatgccgtctgaccaagaccggtattaagaagtttgagctcggaaagtgtgtgagctacaattgaaaa |
13651371 |
T |
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| Q |
110 |
acttgtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccatttccataaaattttcgatgtaga |
209 |
Q |
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| T |
13651370 |
acttgtcatagtgagaactaaagtccattgtacataaacattcattgtactttcttcgagtttaggtccatcaccattgccataaaagtatcgatgtaga |
13651271 |
T |
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| Q |
210 |
acgtataacggtggtcccatcaccattggaaagatgatcccg |
251 |
Q |
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| T |
13651270 |
ttgtataaaattggccccattaccatcggaaagatgatcccg |
13651229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 28607580 - 28607347
Alignment:
| Q |
14 |
atatgtgtcactaatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagtttgagctcagaaagtgtgtgagctacaattgaaaaactt |
113 |
Q |
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| T |
28607580 |
atatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaagggtgtgagctacgactggaaaacct |
28607481 |
T |
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| Q |
114 |
gtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccatttccataaaattttcgatgtagaacgt |
213 |
Q |
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| T |
28607480 |
gtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcaccctttccataaaaatttcgatgtagaaggt |
28607381 |
T |
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| Q |
214 |
ataacggtggtcccatcaccattggaaagatgat |
247 |
Q |
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| T |
28607380 |
ataaagccggtcccatcaccattggaaaaatgat |
28607347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 439323 - 439559
Alignment:
| Q |
14 |
atatgtgtcactaatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagtttgagctcagaaagtgtgtgagctacaattgaaaaactt |
113 |
Q |
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| T |
439323 |
atatgtgtcactgatcatggctgatgttaatgcaaccttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactggaaaacct |
439422 |
T |
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| Q |
114 |
gtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccatttccataaaattttcgatgtagaacgt |
213 |
Q |
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| T |
439423 |
gtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatgtagaaggt |
439522 |
T |
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| Q |
214 |
ataacggtggtcccatcaccattggaaagatgatccc |
250 |
Q |
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| T |
439523 |
ataaagctggtcccatcaccattggaaaaattatccc |
439559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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