View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_41 (Length: 249)
Name: NF5190_high_41
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 27813172 - 27813271
Alignment:
| Q |
69 |
aatcagctaacccttaaaacaagtaaagacttaatcacactaagaagcaccaaacatttattgcaacagatataacaaaattaatagatgtgcatgaaac |
168 |
Q |
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| T |
27813172 |
aatcagctaacccttaaaacaagtaaagacttaatcacactaagaagcaccaaacatttattgcaacagatataacaaaattaatagatgtgcatgaaac |
27813271 |
T |
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Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 3248107 - 3248281
Alignment:
| Q |
76 |
taacccttaaaacaagtaaagacttaatcacactaagaagcaccaaaca-tttattgcaacagatataacaaaattaatagatgtgcatgaaacacacaa |
174 |
Q |
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|||| |||||||||||||||||| |||||| |||||||||||| ||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
3248107 |
taacacttaaaacaagtaaagacgtaatcaaactaagaagcactaaataatttattgcaacagatataacaaaattaattgatgtccatgaaacacacaa |
3248206 |
T |
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| Q |
175 |
aaagggtgttcgatgtcaga--------aaaccttttgcaattctcggattcctttcgtatgtccttgtttctgt |
241 |
Q |
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| T |
3248207 |
caagggtgtttgatgacaaattgacgacaaaccttttgcaattctcggattcctttcgtatgttcttgtttctgt |
3248281 |
T |
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