View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5190_high_42 (Length: 247)
Name: NF5190_high_42
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 55380621 - 55380410
Alignment:
| Q |
16 |
ataattctatatgtagtatagttcattggtttttcaagacatatttatatgttaagttctggttttgctgtgaatcgtttaaaaagttttgtatatcatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
55380621 |
ataattctatatgtagtatagttcattggtttttcaagacatatttatatgttaagttctggttttgctgtgaattgtttaaaaagttttgtacatcatc |
55380522 |
T |
|
| Q |
116 |
gttattatgttagtaataggtagttcattttcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55380521 |
gttattatgttagtaataggtagttcattttcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaac |
55380422 |
T |
|
| Q |
216 |
tgaaagggaaaa |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55380421 |
tgaaagggaaaa |
55380410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University