View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_52 (Length: 209)
Name: NF5190_high_52
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 11624873 - 11624679
Alignment:
| Q |
1 |
gtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggac |
100 |
Q |
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| T |
11624873 |
gtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttctgcaaggcgtgtcaaagatattggac |
11624774 |
T |
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| Q |
101 |
tgcaggcggaaccatgagaaatgttccggtgggtgcaggaagaagaaaaaataagaacaactcttcgtcacattatcgccacatcaccatctctg |
195 |
Q |
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| T |
11624773 |
tgcaggtggaaccatgagaaatgttccggtgggtgcaggaagaagaaaaaataagaacaactcttcgtcgcattatcgccacatcaccatctctg |
11624679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 31771803 - 31771910
Alignment:
| Q |
20 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
119 |
Q |
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| T |
31771803 |
ggacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcatttttgtaagaaatgtcaaagatattggactgcaggaggaacaatgaga |
31771902 |
T |
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| Q |
120 |
aatgttcc |
127 |
Q |
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| T |
31771903 |
aatgttcc |
31771910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 2823621 - 2823737
Alignment:
| Q |
20 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
119 |
Q |
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| T |
2823621 |
ggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaaccatgaga |
2823720 |
T |
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| Q |
120 |
aatgttccggtgggtgc |
136 |
Q |
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| T |
2823721 |
aacgtaccggtaggtgc |
2823737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 3775596 - 3775700
Alignment:
| Q |
20 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
119 |
Q |
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|||||| || ||||| ||||||||||| ||||| || || || || ||| ||||||||||| || || ||||| |||||||| || ||| |||||||| |
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| T |
3775596 |
ggacaccaaattctgctactacaataactacaatgttaaccaacctcgccatttttgcaagaaatgccagagatactggactgccgggggagccatgaga |
3775695 |
T |
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| Q |
120 |
aatgt |
124 |
Q |
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||||| |
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| T |
3775696 |
aatgt |
3775700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 18188160 - 18188204
Alignment:
| Q |
20 |
ggacacaaagttctgttactacaataattacaacgtcaatcagcc |
64 |
Q |
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| T |
18188160 |
ggacacaaaattttgttactacaataattacaacgccaaccagcc |
18188204 |
T |
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