View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_6 (Length: 519)
Name: NF5190_high_6
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_6 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 228 - 445
Target Start/End: Complemental strand, 10985360 - 10985143
Alignment:
| Q |
228 |
ttgataagtgacaaacgaaaacatttatgtaatcaatattggagagtgttcttgcaaaatacaatgtgaagcataaggtggttacaccataacaacttta |
327 |
Q |
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| T |
10985360 |
ttgatcagtgacaaacgaaaacatttatgtaatcaatattggagagtgttcttgcaaaatacaatgtgaagcataagatggttacaccataacaacttga |
10985261 |
T |
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| Q |
328 |
aacgagttgacaattggaagtctcaaacatattttagagaaagattgatccaaaaagatggatgatacattatgagcttacataacagctttcataacac |
427 |
Q |
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| T |
10985260 |
aacgagttgacaattggaagtctcaaacatattttagagaaagattgatccaaaaagacggatgatacattatgagcttacataacagctttcaaaacac |
10985161 |
T |
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| Q |
428 |
acctgaaattgtaacaat |
445 |
Q |
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| T |
10985160 |
acctgagattataacaat |
10985143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 10990625 - 10990407
Alignment:
| Q |
13 |
gaataaagggacatcatgtaacattgccatagtacttcgtatggaggccattacaaatggagataaaattgatcaacaagcagtattgctnnnnnnnntg |
112 |
Q |
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| T |
10990625 |
gaataaagggacatcatctaacatttccatagttcttcatatggaggccattacaaatggagataaaactgatcaacatgcggtattgctaaaaaaaatg |
10990526 |
T |
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| Q |
113 |
agatgcccctacacgaaattttgg----------------ttgtcggggtactgatttcatgggacctttcccttcatctttttctaacctttacgtcac |
196 |
Q |
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| T |
10990525 |
agatgctcctacacgaaattttggaaattggaacttttggttgtcggggtactgatttcatgggacctttcccttcatctttttctaacctttatgtcac |
10990426 |
T |
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| Q |
197 |
ctaataaattgaagctata |
215 |
Q |
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| T |
10990425 |
ctaataaattgaagctata |
10990407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 9288 - 9330
Alignment:
| Q |
460 |
attaaatactgccttataaagagttattaattaatagcatata |
502 |
Q |
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| T |
9288 |
attaaatactaccttataaagagttattaattaatagcatata |
9330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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