View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_high_8 (Length: 492)
Name: NF5190_high_8
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 2561416 - 2561130
Alignment:
| Q |
1 |
ccacaaccttgtctatcaacagcaaaacaattttgaaagccaggaatatgacggaattcttcgactttattactgaagactagtgtctcacttagaaaga |
100 |
Q |
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| T |
2561416 |
ccacgaccttgtctatcaacagcaaaacaattttcaaagccaggaatatgatggaattcctcgactttattactgaagactagtgtctcacttagaaaga |
2561317 |
T |
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| Q |
101 |
gggtgtctggcttgtaatatcgaactaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcatttttag |
200 |
Q |
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| T |
2561316 |
gggcatctggcttgtaatatcgaactaggaactttaaattagggactgcgctcaggctccctagacctcgacagttctagctaataacactcatttttag |
2561217 |
T |
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| Q |
201 |
aaatgcacaccctgacaagaagcaagatcatattgaaacaatagcatatggagggtgtttgacgcttcaaagtaacacaagatccta |
287 |
Q |
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| T |
2561216 |
aaatgcacaccctgacaagaagcaagatcatattgaaacaatagcatatggagggtgtttgacgcttcaaagtaacacaagatccta |
2561130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 300 - 484
Target Start/End: Complemental strand, 2561077 - 2560893
Alignment:
| Q |
300 |
gaataagagtgaaacgtatggttagaaataacatatgcaagtctcggttcaaaactagaggaggacaaataacatcaggcttatataatcaatatctata |
399 |
Q |
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| T |
2561077 |
gaataagagtgaaacgtgtggttagaaataacatatgcaagtctcggttcaaaactagaggaggacaaataacatcaggcttatataatcaatatctata |
2560978 |
T |
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| Q |
400 |
accatgattgattaacttgaaattgagacacattttgtattgactaaggaattgacggactatggaattacatctaagaataatc |
484 |
Q |
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| T |
2560977 |
accatgattgattaacttgaaattgagacacgttttgtatttactagggaattgacggactatggaattacatttaagaataatc |
2560893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 388 - 484
Target Start/End: Complemental strand, 2559536 - 2559440
Alignment:
| Q |
388 |
tcaatatctataaccatgattgattaacttgaaattgagacacattttgtattgactaaggaattgacggactatggaattacatctaagaataatc |
484 |
Q |
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| T |
2559536 |
tcaatatccataaccatgattgattaacttgaaattgagacacgttttgtatttaccagggaattgacggactatggaattacatctaagaataatc |
2559440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 32953556 - 32953483
Alignment:
| Q |
121 |
cgaactaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcat |
194 |
Q |
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| T |
32953556 |
cgaattaggaactttaaattaggaattgtgctcgggctacctaaacctcgacaattccaactaatgacactcat |
32953483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 25908301 - 25908393
Alignment:
| Q |
85 |
gtctcacttagaaagagggtgtctggcttgtaatatcgaactaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttc |
177 |
Q |
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| T |
25908301 |
gtctcacttaagaagagggtgtccggcttataatagcgaactaaatactttaattttggaactacgctcaggttcgctaaacctcggcagttc |
25908393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 9613522 - 9613594
Alignment:
| Q |
124 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcattt |
196 |
Q |
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| T |
9613522 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacagttccaccaaataagactcattt |
9613594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 46094292 - 46094362
Alignment:
| Q |
124 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcat |
194 |
Q |
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| T |
46094292 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcat |
46094362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 3966317 - 3966370
Alignment:
| Q |
124 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttc |
177 |
Q |
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| T |
3966317 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacagttc |
3966370 |
T |
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