View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5190_low_1 (Length: 758)
Name: NF5190_low_1
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 338 - 737
Target Start/End: Original strand, 2761293 - 2761689
Alignment:
| Q |
338 |
cacacaaaccattggtccatcatggaaggttttcagctttaggaggnnnnnnnnnnnnnnnnnctgcggtagtttcatgatgaagacaaaacgtagagta |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2761293 |
cacacaaaccattggtccatcatggaaggttttcagctttaggag---tagtagtagtagtagctgcggtagtttcatgatgaagacaaaacgtagagta |
2761389 |
T |
|
| Q |
438 |
cgcaggacaaaagataaggatacgaaataccacacatttcaaatacaaaatgtaacaatctgtttcttccccaaactttttagatatgtcgtcaacacca |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2761390 |
cgcaggacaaaagataaggatacgaaataccacacatttcaaatacaaaatgtaacaatctgtttcttgcccaaactttttagatatgtcgtcaacacca |
2761489 |
T |
|
| Q |
538 |
ccatctttctcttttcctgcaccctcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccattg |
637 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2761490 |
acatctttctcttttcctgcaccttcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccattg |
2761589 |
T |
|
| Q |
638 |
tgtaagtaagagtatttgcatggaataaattggctacaaatcattccaatttatagaacttgtgatttccttgaatgataagtgaacgtgttgaatttgg |
737 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2761590 |
tgtaagtaagagtatttgcatggaataaattggctacaaataattccaatttatagaacttgtgatttccttgaatgataagtgaacgtattgaatttgg |
2761689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 2760949 - 2761183
Alignment:
| Q |
18 |
catatatagtattataactatctcgtctttctttcacttattggtgaaaagaatttgctttaactataacnnnnnnnnnnnnnnnnnncatgatatataa |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2760949 |
catatatagtattataactatct------tctttcacttattggtgaaaagaatttgctttaactataacaaaaaaaaataaa-----catgatatataa |
2761037 |
T |
|
| Q |
118 |
tattgtaatactagccaaaaccatatttccatcgatttgacaagaaaaacactagaaattttatttaaattctggatatatatataagtacaaccatgca |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
2761038 |
cattgtaatgctagccaaaaccatatttccatcgatttgacaagaaaaacactagaaattttatttaaattctgg--atatatataagtacaac----ca |
2761131 |
T |
|
| Q |
218 |
tgatatcatagcacaatataattaagaggactggcccataaaggttatttaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2761132 |
tgatatcatagcacaatataattaagaggactggcccataaaggttatttaa |
2761183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 723
Target Start/End: Original strand, 11952570 - 11952641
Alignment:
| Q |
652 |
tttgcatggaataaattggctacaaatcattccaatttatagaacttgtgatttccttgaatgataagtgaa |
723 |
Q |
| |
|
||||||||||||||| |||| |||| | || ||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
11952570 |
tttgcatggaataaaagggctctaaattagtctaatttatagaactagtgatttccttaaatgagaagtgaa |
11952641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 635
Target Start/End: Original strand, 41814414 - 41814495
Alignment:
| Q |
554 |
ctgcaccctcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccat |
635 |
Q |
| |
|
||||||||||||||||| ||||||| | | |||| |||| |||||||| ||||| | ||||| ||||||| |||| ||||| |
|
|
| T |
41814414 |
ctgcaccctcaacactacaatcattgataattgccacaacaaggagaactaaaatcaatgaagtagtgatgatttttgccat |
41814495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University