View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_11 (Length: 473)
Name: NF5190_low_11
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_11 |
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| [»] scaffold0758 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 24 - 466
Target Start/End: Original strand, 38000092 - 38000534
Alignment:
| Q |
24 |
ggtacccaattgctcagtcaaatacgttacagattactcctaataacttggcttagttgctttacttgtgtgagaaataggagaaaacccatttgcacaa |
123 |
Q |
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| T |
38000092 |
ggtacccaattgctcagtcaaatacgttacagattactcctaataacttggcttagtggctttacttgtgtgagaaataggagaaaacccatttgcacaa |
38000191 |
T |
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| Q |
124 |
aaataggagaaaaccgtgttcattcaatacagggggaagaaaggagaacaaaaatattagttgcacaatgtagcaaattgctttgcataaaaataagaga |
223 |
Q |
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| T |
38000192 |
aaataggagaaaaccgtgttcattcaatacagggggaagaaaggagaacaaaaatattagttgcacaatgtagcaaattgctttgcataaaaataagaga |
38000291 |
T |
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| Q |
224 |
aaaccgtgttcattcaataacagaccatgatatattttctgtcttctcttgcttatacaattttcttccacaatttcccttctctcaattaagacacatt |
323 |
Q |
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| T |
38000292 |
aaaccgtgttcattcaataacagaccatgatatattttctgtcttctcttgctcatacaattttcttccacaatttcccttctctcaattaagacacatt |
38000391 |
T |
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| Q |
324 |
ttcttcaatcgaccaaattttccttctctctcaccatgcctcaagagtcaagacaatcattgattaactaaatctcattcaattaccatgctcctcgcca |
423 |
Q |
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| T |
38000392 |
ttcttcaatctaccaaattttccttctctctcaccatgcctcaagagtcaagacaatcattgattaactaaatctcattcaattaccatgctcctcgcca |
38000491 |
T |
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| Q |
424 |
ttcactccatcattccatgatatttgtattggatgcctctgtg |
466 |
Q |
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| T |
38000492 |
ttcactccatcattccatgatatttgtattggttgcctttgtg |
38000534 |
T |
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Target: scaffold0758 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 342 - 290
Alignment:
| Q |
25 |
gtacccaattgctcagtcaaatacgttacagattactcctaataacttggctt |
77 |
Q |
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| T |
342 |
gtacccaattgctcagtcaaataggttacagattactcctaataacttggctt |
290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 13164771 - 13164723
Alignment:
| Q |
25 |
gtacccaattgctcagtcaaatacgttacagattactcctaataacttg |
73 |
Q |
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| T |
13164771 |
gtacccaattgctcagtcaagtaggttgcatattactcctaattacttg |
13164723 |
T |
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