View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_13 (Length: 456)
Name: NF5190_low_13
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 156 - 338
Target Start/End: Complemental strand, 34465582 - 34465400
Alignment:
| Q |
156 |
tgacaatagcagcagcgtggcggtggttgtgtgtttgagtgtgatgttgtgggaggagtaaggaggagatgttggctgggaaagtggcgaggaaaggtgg |
255 |
Q |
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| T |
34465582 |
tgacaatagcagcagcgtggcggtggttgtgtgttcgagtgtggtgttgtgggaggagtaaggaggagatgttggctgggaaagtggcgaggaaaggtgg |
34465483 |
T |
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| Q |
256 |
agaaggagggagtggtggtgaatagtaagatgggaagaatggtgtttgtggtggtgaagatgaagagatggaggaaaatggaa |
338 |
Q |
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| T |
34465482 |
agaaggagggagtggtggtgaatagtaagatgggaagaatggtgtttgtggtggtgaagatgaagagatggaggaaaatggaa |
34465400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 34465737 - 34465618
Alignment:
| Q |
1 |
agcggtgtttggtgggaacaaacggagactatctgatcttgaagcattatcatcgttaatggtggtggaagaagttttgtggctgtgacggtggcggtgg |
100 |
Q |
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| T |
34465737 |
agcggtgtttggtgggaacaaacggagactatctgatcttgaagcattatcatcgttaacggtggtggaagaagttttgtggctgtgacggtggcggtgg |
34465638 |
T |
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| Q |
101 |
aaggcgaagacagtggaaat |
120 |
Q |
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| T |
34465637 |
aaggcgaagacagtggaaat |
34465618 |
T |
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