View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_14 (Length: 447)
Name: NF5190_low_14
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 197 - 432
Target Start/End: Complemental strand, 36190884 - 36190649
Alignment:
| Q |
197 |
cttctatgtttagttactaaacttatatctttggacacaagttcacatttctcnnnnnnngattataatcaatgttgcataccagacaatgcgaccaaat |
296 |
Q |
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| T |
36190884 |
cttctatgtttagttactaaacttatatctttggacacaagttcacatttctcaaaaaaagattataatcaatgttgcataccagacaatgcgaccaaat |
36190785 |
T |
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| Q |
297 |
ccttggtggaaagaccaagagcattaaaccttgagatgagttggttgaggcttgaagtgggtgctgggatgtcattgtttgcagctgatttactagctgt |
396 |
Q |
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| T |
36190784 |
ccttggtggaaagaccaagagcattaaaccttgagatgagttggttgaggcttgaagtgggtgctgggatgtcattgtttgcagctgatttactagctgt |
36190685 |
T |
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| Q |
397 |
tcttgcatctcttcttccaagtttcacatcccatgt |
432 |
Q |
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| T |
36190684 |
tcttgcatctcttcttccaagtttcacatcccatgt |
36190649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 36191084 - 36190988
Alignment:
| Q |
1 |
agcaaaggaagtatctatgttggagtcgttgtaaatgtgggctctaaatgtagtgcaccttgcttgtccaattgtgtgaccccctagtccaagcatc |
97 |
Q |
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| T |
36191084 |
agcaaaggaagtatctatgttggagtcgttgtaaatgtgggctctaaatgtagtgcaccttgcttgtccaattgtgtgaccccctagtccaagcatc |
36190988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 31797972 - 31798012
Alignment:
| Q |
374 |
tttgcagctgatttactagctgttcttgcatctcttcttcc |
414 |
Q |
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| T |
31797972 |
tttgcagctgctttgcttgctgttcttgcatctcttcttcc |
31798012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 425
Target Start/End: Complemental strand, 43180469 - 43180319
Alignment:
| Q |
275 |
ataccagacaatgcgaccaaatccttggtggaaagaccaagagcattaaaccttgagatgagttggttgaggcttgaagtgggtgctgggatgtcattgt |
374 |
Q |
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| T |
43180469 |
atacctgacaatgtgaccaaatctttgctagaaagaccaacggcgctaaacattgaggtgagtgtattgaggttggaagttggtgccgggatggcagtgt |
43180370 |
T |
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| Q |
375 |
ttgcagctgatttactagctgttcttgcatctcttcttccaagtttcacat |
425 |
Q |
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| T |
43180369 |
tagcagcggattgactagccgttttagcatctcttcttccaagttttacat |
43180319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 425
Target Start/End: Complemental strand, 43189320 - 43189171
Alignment:
| Q |
276 |
taccagacaatgcgaccaaatccttggtggaaagaccaagagcattaaaccttgagatgagttggttgaggcttgaagtgggtgctgggatgtcattgtt |
375 |
Q |
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| T |
43189320 |
tacctgacaatgcgactaagtccttggtggaaagaccaacattcttaaacattgaggtgagtatattaaggttggaagttggtcttgggatggcagtgtt |
43189221 |
T |
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| Q |
376 |
tgcagctgatttactagctgttcttgcatctcttcttccaagtttcacat |
425 |
Q |
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| T |
43189220 |
cgcatcagattgactagcagttgtggcatctcttcttccaagttttacat |
43189171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 43189999 - 43189911
Alignment:
| Q |
1 |
agcaaaggaagtatctatgttggagtcgttgtaaatgtgggctctaaatgtagtgcaccttgcttgtccaattgtgtgaccccctagtc |
89 |
Q |
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| T |
43189999 |
agcaaaagaagtatctatgttggtctcattgtagattcgtaccctaaatgttgtgcaccttgcttgtccaattgtgtgagcacctagtc |
43189911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 420
Target Start/End: Complemental strand, 43194810 - 43194671
Alignment:
| Q |
281 |
gacaatgcgaccaaatccttggtggaaagaccaagagcattaaaccttgagatgagttggttgaggcttgaagtgggtgctgggatgtcattgtttgcag |
380 |
Q |
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||||||| |||||| |||||| |||||||||||| |||| ||||| ||||| ||||| || ||| ||||||| ||||| ||||| | |||| |||| |
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| T |
43194810 |
gacaatgtgaccaagtccttgctggaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgccgggattgcggtgttagcag |
43194711 |
T |
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| Q |
381 |
ctgatttactagctgttcttgcatctcttcttccaagttt |
420 |
Q |
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| T |
43194710 |
cagattgactagccgtcttggcgtctcttcttccaagttt |
43194671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 43195029 - 43194951
Alignment:
| Q |
1 |
agcaaaggaagtatctatgttggagtcgttgtaaatgtgggctctaaatgtagtgcaccttgcttgtccaattgtgtga |
79 |
Q |
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| T |
43195029 |
agcaaatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcaccttgcttgtccaattgtgtga |
43194951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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