View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_15 (Length: 441)
Name: NF5190_low_15
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 86 - 439
Target Start/End: Complemental strand, 34465230 - 34464889
Alignment:
| Q |
86 |
tagggttaacatcattgtagtcatggtgatgaatgagtaggtccaagtttgaactagaagtaggaaagagttactagtatttgttcattttgcatttgtt |
185 |
Q |
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| T |
34465230 |
tagggttaacgtcattgtagtcattgtgatgaatgagtaggtccaagtttgaactagaagtaggaaagagttactagtatttgttcattttgcatttgtt |
34465131 |
T |
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| Q |
186 |
gttggannnnnnnggttttattaagttgtggtttctagctagctaccatataggtagctatgttatgatgaaatgctacaagctaagaactgcttattag |
285 |
Q |
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| T |
34465130 |
gttggatttttttggttttattaagttgtggtttctagctagc----atataggtagctatgttatgatgaaatgctacaagctaagaactggttattac |
34465035 |
T |
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| Q |
286 |
tgtgaaggtggtagccgatggtaaatgtgaaactgggaagcacggacactcttcaaattagacatattataatattggatacatattgtgttcaacattg |
385 |
Q |
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| T |
34465034 |
tgtgaaggtggtagccgatggtaaatatgaaattgggaagcacggatactcttcaaattagacatattacattattggatacatatcatgtt-------- |
34464943 |
T |
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| Q |
386 |
acacatcattaatacatataattatactgtgatattggtgtatcggtatctgtg |
439 |
Q |
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| T |
34464942 |
acacatcattaatacatataattatactgtgatgttgatgtattggtatctgtg |
34464889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34465312 - 34465256
Alignment:
| Q |
1 |
acagtggtgggtggaggatacggcggttgtggtggttggaggaatgagcacttgatg |
57 |
Q |
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| T |
34465312 |
acagtggttggtggaggatacggcggttgtggtggttggaggaatgagcacttgatg |
34465256 |
T |
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