View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_18 (Length: 399)
Name: NF5190_low_18
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 27 - 383
Target Start/End: Original strand, 19024736 - 19025095
Alignment:
| Q |
27 |
ccaaagggta-ggaccaccaagaaaaccaaagggtgggattatcatttagatactgcaactcggttcgcaccagttacacaactcttcaacttcaatgga |
125 |
Q |
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| T |
19024736 |
ccaaagggtaaggaccaccaagaaaaccgaagggtgggattatcatttagatactgcaactcggttcgcaccagttacacaactcttcaacttcaatgga |
19024835 |
T |
|
| Q |
126 |
tagggttgataacaaagccagggaatacatcatcagggtcgtgtatatgaggattattctcaacaataaaagggtcgtcacacttatcactatttgtgct |
225 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
19024836 |
tagggttgataacaaggccagggaagacatcatcagggtcgtgtatatgaggattattcttaacaataaaagggccgtcgcacttatcactatttgtgct |
19024935 |
T |
|
| Q |
226 |
aag--tataaacttcacataccacgtagatttcgttgcaacaaggtcattcggacaacaggtggttgatctataatatggttagaaatgcaatatgaata |
323 |
Q |
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| T |
19024936 |
aagcatctcaccttcacataccacgtagatttcgttgcaacaaggtcattcggacaacaggtggttgatctataatatggttagaaatgcaatatgaata |
19025035 |
T |
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| Q |
324 |
gcacaataccatgaagctgcaccaactatggcttttgaacttaagattatgggtcccttt |
383 |
Q |
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| T |
19025036 |
gcacaataccatgaagctgcaccaactatggcttttgaacttaagattaagggtcccttt |
19025095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 27 - 383
Target Start/End: Complemental strand, 20729900 - 20729541
Alignment:
| Q |
27 |
ccaaagggta-ggaccaccaagaaaaccaaagggtgggattatcatttagatactgcaactcggttcgcaccagttacacaactcttcaacttcaatgga |
125 |
Q |
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| T |
20729900 |
ccaaagggtaaggaccaccaagaaaaccgaagggtgggattatcatttagatactgcaactcggttcgcaccagttacacaactcttcaacttcaatgga |
20729801 |
T |
|
| Q |
126 |
tagggttgataacaaagccagggaatacatcatcagggtcgtgtatatgaggattattctcaacaataaaagggtcgtcacacttatcactatttgtgct |
225 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
20729800 |
tagggttgataacaaggccagggaagacatcatcagggtcgtgtatatgaggattattcttaacaataaaagggccgtcgcacttatcactatttgtgct |
20729701 |
T |
|
| Q |
226 |
aag--tataaacttcacataccacgtagatttcgttgcaacaaggtcattcggacaacaggtggttgatctataatatggttagaaatgcaatatgaata |
323 |
Q |
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||| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20729700 |
aagcatctcaccttcacataccacgtagatttcgttgcaacaaggtcattcggacaacaggtggttgatctataatatggttagaaatgcaatatgaata |
20729601 |
T |
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| Q |
324 |
gcacaataccatgaagctgcaccaactatggcttttgaacttaagattatgggtcccttt |
383 |
Q |
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|
| T |
20729600 |
gcacaataccatgaagctgcaccaactatggcttttgaacttaagattaagggtcccttt |
20729541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 12618455 - 12618553
Alignment:
| Q |
131 |
ttgataacaaagccagggaatacatcatcagggtcgtgtatatgaggattattctcaacaataaaagggtcgtcacacttatcactatttgtgctaagt |
229 |
Q |
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||||| |||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || | ||||||||||||| ||||| ||||| |
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| T |
12618455 |
ttgatgacaaggccagggaagacatcatcagggtcatgtatatgaggattgttctcaacaataaaaggatcattacacttatcactaattgtgttaagt |
12618553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 12631271 - 12631369
Alignment:
| Q |
131 |
ttgataacaaagccagggaatacatcatcagggtcgtgtatatgaggattattctcaacaataaaagggtcgtcacacttatcactatttgtgctaagt |
229 |
Q |
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|||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || | ||||||||||||| ||||| ||||| |
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| T |
12631271 |
ttgataacaagaccagggaagacatcatcagggtcatgaatatgaggattattctcaacaataaaaggatcattacacttatcactaattgtgttaagt |
12631369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 16783365 - 16783457
Alignment:
| Q |
131 |
ttgataacaaagccagggaatacatcatcagggtcgtgtatatgaggattattctcaacaataaaagggtcgtcacacttatcactatttgtg |
223 |
Q |
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||||| |||| ||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||| |
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| T |
16783365 |
ttgatgacaaggccagggaagacatcatcaggatcatgtatatgaggattattctcaacaatgaaagggtcattacacttatcactaattgtg |
16783457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 12631512 - 12631558
Alignment:
| Q |
319 |
gaatagcacaataccatgaagctgcaccaactatggcttttgaactt |
365 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
12631512 |
gaatagcacaataccatgaagctgcatcagctatggcttttgaactt |
12631558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 16783607 - 16783654
Alignment:
| Q |
320 |
aatagcacaataccatgaagctgcaccaactatggcttttgaacttaa |
367 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
16783607 |
aatagcacaataccatgaagctgcttcagctatggcttttgaacttaa |
16783654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 16789660 - 16789618
Alignment:
| Q |
323 |
agcacaataccatgaagctgcaccaactatggcttttgaactt |
365 |
Q |
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|||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
16789660 |
agcacaataccatgaagctgcatcagctatggcttttaaactt |
16789618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 26303330 - 26303245
Alignment:
| Q |
131 |
ttgataacaaagccagggaatacatcatcagggtcgtgtatatgaggattattctcaacaataaaagggtcgtcacacttatcact |
216 |
Q |
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|||||||||| ||||||||| ||||||||||| || || ||||| ||||| | ||||||||| |||| || ||||||| ||||| |
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| T |
26303330 |
ttgataacaaggccagggaaaacatcatcaggatcatgaatatgtggattctcttcaacaatataaggatcaccacacttttcact |
26303245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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