View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_20 (Length: 386)
Name: NF5190_low_20
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 46502546 - 46502383
Alignment:
| Q |
19 |
caaaaaagtgtaagaaaacatgagaaagagggaatcaaagagtctgacattaaggggtactcatgtgcttgtagcatggtttaagaacctcttactgagt |
118 |
Q |
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| T |
46502546 |
caaaaaagtgtaagaaaacatgagaaagagggaatcaaagagtctgacattaaggggtactcatgtgcttgtagcatggtttaagaacctcttactgagt |
46502447 |
T |
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| Q |
119 |
gttctttaattgtacgaatttaaaaatcaccaatacaaaagatgattctccttactgttacctc |
182 |
Q |
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| T |
46502446 |
gttctttaattgtacgaatttaaaaatcaccaatacaaaagatgattctccttactgttacctc |
46502383 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 46502292 - 46502237
Alignment:
| Q |
275 |
aaatgagattcatattctcctacaatttcaaatcaaaacctcattaatggttaata |
330 |
Q |
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| T |
46502292 |
aaatgagattcatattctcctacaatttcaaatcaaaacctcattaatggttaata |
46502237 |
T |
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