View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_21 (Length: 381)
Name: NF5190_low_21
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 6857018 - 6856660
Alignment:
| Q |
1 |
gaacaattttcttaccgaagtcaaagttgacaacaacaattagtgaaacttgnnnnnnn-cttataaatttgtacatcaaccaagtcttcacattgataa |
99 |
Q |
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| T |
6857018 |
gaacaattttcttacggaagtcaaagttgacatcaacaattagtgaaacttgcaaagaaacttataaatta-tacatcaaccaagtcttcacattgataa |
6856920 |
T |
|
| Q |
100 |
aaagttgaatctatacctttcgaatgaatcaacttcttacaagccgagtcaacattcgtgatgagtgctgtctaaatcacgaatgaatcaacattcgtta |
199 |
Q |
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| T |
6856919 |
aaagttgaatctatacctttggaatgaatcaacttat---aagcagagtcaacattcgtgatgagtgcggtctaaatcacgaatgaatcaacattcgtta |
6856823 |
T |
|
| Q |
200 |
cgaggacaaacatcaatcattttaatttgttttagttctgttttatctggtataatttctacgtaatcaatttattcgattataaacaaactattttttg |
299 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6856822 |
tgaggacaaacatcaatcattttaattttttttagttctgttttatctggtataatttctacgtaatcaatttattcgattataaacaaactattttttg |
6856723 |
T |
|
| Q |
300 |
taacctcaaaatcaaacacaataaattgaaattgcataatggatatgattttggcatcaatgg |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6856722 |
taacctcaaaatcaaacacaataaattgaaattgcataatggatatgattttggcatcaatgg |
6856660 |
T |
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