View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_27 (Length: 347)
Name: NF5190_low_27
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 330
Target Start/End: Original strand, 9224361 - 9224681
Alignment:
| Q |
10 |
attattctcaccgtaatacattcagcaaaacaaagaacttgatgtagcaccaaactacaaaagacaaaagtgtaaagaggataacacattacaaaatcaa |
109 |
Q |
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| T |
9224361 |
attattctcaccgtaatacattcagcaaaacaaagaacttgatgtagcaccaaactacaaaagacaaaagtgtaaagaggataccacattacaaaatcaa |
9224460 |
T |
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| Q |
110 |
catttaatttaatcccttacaaaagacattagggaatctcaagcaaggagagaggcccctatttatagcaccacactcaactaaaaattgagagcaacat |
209 |
Q |
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| T |
9224461 |
catttaatttaatcccctacaaaagacattagggaatctcatgcaaggagataggcccctatttatagcaccacactcaactaaaaattgagagcaacat |
9224560 |
T |
|
| Q |
210 |
ttagttcccaaaaactctccaattgaaacgaatcaatatgttggttaacaagttcccaaaacgtgaacattgaatgattcttcaacaagctgaactacat |
309 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9224561 |
ttagttcccataaactctccaattggaacgaatcaatatgttggttaacaagttcccaaaacgtgaacattgaatgattcttcaacaagctgaactacat |
9224660 |
T |
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| Q |
310 |
gaaggaattcaagaagtaaat |
330 |
Q |
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||||||||||||||||||||| |
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| T |
9224661 |
gaaggaattcaagaagtaaat |
9224681 |
T |
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