View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5190_low_3 (Length: 585)

Name: NF5190_low_3
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5190_low_3
NF5190_low_3
[»] chr4 (11 HSPs)
chr4 (218-575)||(44879562-44879919)
chr4 (34-565)||(44861577-44862119)
chr4 (218-545)||(44848115-44848439)
chr4 (346-560)||(44836269-44836483)
chr4 (21-180)||(44879381-44879536)
chr4 (282-539)||(44897150-44897407)
chr4 (34-83)||(44847961-44848010)
chr4 (27-78)||(44896837-44896888)
chr4 (34-79)||(44836069-44836114)
chr4 (218-307)||(44836166-44836252)
chr4 (117-193)||(44896970-44897047)
[»] chr3 (2 HSPs)
chr3 (354-499)||(12927449-12927594)
chr3 (38-79)||(12927749-12927790)
[»] chr8 (1 HSPs)
chr8 (34-79)||(22637871-22637916)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 218 - 575
Target Start/End: Original strand, 44879562 - 44879919
Alignment:
Q  218 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879562 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 44879661  T
Q  318 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44879662 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaa 44879761  T
Q  418 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879762 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 44879861  T
Q  518 cttaggtaagaatataaccatttcactctctgttctttgcattttctcaccctctctg 575  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  44879862 cttaggtaagaatttaaccatttcactctctgttctttgcattttctcaccctgtctg 44879919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 34 - 565
Target Start/End: Original strand, 44861577 - 44862119
Alignment:
Q  34 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcagaaagaaatatctgaacagatagatatatgatcaagaaatacgtagctaatggc 133  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||    |||||||||| |||    ||| | ||||||||| ||||||||||||    
T  44861577 tctgttctttacttgggtcgtcctgcaactttttccggtaagtgcagaaa----tatctgaacaaata----tatcagcaagaaataagtagctaatggc 44861668  T
Q  134 caattttgatttttcaaatagctgtgatattttttatgtccctaaatcaactttatat--gtccatagccatgatgaaagtaaacttt------------ 219  Q
    ||||||||| ||||||||||||| ||||||| ||  ||||| ||||||| ||||||||  |||   ||||||||||||||||||||||                
T  44861669 caattttgagttttcaaatagctctgatattcttgctgtccataaatcacctttatatatgtctgcagccatgatgaaagtaaactttcaattcaatttg 44861768  T
Q  220 ----ttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgta 315  Q
        ||||||||||||||||||| |||||  ||||||||  |||| |||||||||| |||||||||||| |||||||||||||||| |||||  ||||||    
T  44861769 gattttctgctcatggaacaatacatgactagtattcaatttcaacaattgtatctaacatccaataat-caaacacaacagaataaatgttttagtgta 44861867  T
Q  316 tttatctgttcaacataattaagctctatgt--gcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatg 413  Q
    ||||||| |||||||  | ||| |||||| |  |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  44861868 tttatctcttcaacacgagtaaactctatatatgcattttatgcaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatg 44861967  T
Q  414 aaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggct 513  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| | |||||| || |||||||| ||||| |||||||    
T  44861968 aaaatgcatggtcttggtgacgggccatattggttgatttcatatggatattttcttgccttatctgtgatctacatattgtgtttcgtgatattcggct 44862067  T
Q  514 catccttaggtaagaatataaccatttcactctctgttctttgcattttctc 565  Q
    ||  |||||||||||||||||| |||||| ||||||||||| ||||||||||    
T  44862068 cagtcttaggtaagaatataactatttcattctctgttcttggcattttctc 44862119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 218 - 545
Target Start/End: Original strand, 44848115 - 44848439
Alignment:
Q  218 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 317  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||   |||||||| |||| |||||||||||||  | ||||||    
T  44848115 ttttctgctcatggaacaatacatgactcgtattcaaagtcaacaattgtatctaacatc---taatgcaagcacagcagaatatatgttgtaatgtatt 44848211  T
Q  318 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaa 417  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44848212 tatctgttcaacatgattaacctccatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaa 44848311  T
Q  418 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 517  Q
    ||||||||||||||||||||||||||||| ||||| |||| || ||||||||||| ||||| | |||||| || || |||||||||| ||| ||||||      
T  44848312 tgcatggtcttggtgacgggccatattggatgatttcatacggctattttcttgccttatcggtgatctacattttatgttttgtgacgtttggctcagt 44848411  T
Q  518 cttaggtaagaatataaccatttcactc 545  Q
    ||| ||||||||||||||||||| ||||    
T  44848412 ctttggtaagaatataaccatttaactc 44848439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 346 - 560
Target Start/End: Original strand, 44836269 - 44836483
Alignment:
Q  346 tgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattg 445  Q
    |||||||||| |||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  44836269 tgcattttatataggttgttttgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgatgggccatattg 44836368  T
Q  446 gttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatttcactc 545  Q
    | ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||  ||| |||||||||| ||  |||| ||||    
T  44836369 gatgattacatatggttattttcttgccttatcagcgatatacatgttgtgttttgtgatattcggctcagtcttgggtaagaataaaattatttgactc 44836468  T
Q  546 tctgttctttgcatt 560  Q
    ||| ||||| |||||    
T  44836469 tctattcttggcatt 44836483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 44879381 - 44879536
Alignment:
Q  21 ctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcagaaagaaatatctgaacagatagatatatgatcaagaaata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  44879381 ctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcagaaagaaatatctgaac----agatatatgatcaagaaata 44879476  T
Q  121 cgtagctaatggccaattttgatttttcaaatagctgtgatattttttatgtccctaaat 180  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44879477 agtagctaatggtcaattttgatttttcaaatagctgtgatattttttatgtccctaaat 44879536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 282 - 539
Target Start/End: Original strand, 44897150 - 44897407
Alignment:
Q  282 aatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggttt 381  Q
    |||||||||||  || |||| |||||  ||||||||| ||| || || || | ||||||||||   ||||| ||||||||| | |||||||||||| |||    
T  44897150 aatgcaaacactgcataatagatgttttagtgtatttttctttttaatatgagtaagctctatacacatttaatgtaggttgtgctgacatcactgattt 44897249  T
Q  382 atgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagc 481  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||| |||||||     
T  44897250 atgagaagcaacaaaaattgagaatcatgatgaaaatgcatggtcttggtgatggaccatattggatgattacatatggttatttccttgccttatcagt 44897349  T
Q  482 gatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatt 539  Q
    |||||| |||||||| |||||||| || ||||||  | ||||||||||||||||||||    
T  44897350 gatctacatgttgtgctttgtgatatttggctcagtcctaggtaagaatataaccatt 44897407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 44847961 - 44848010
Alignment:
Q  34 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcagaaa 83  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  44847961 tctgttctttacatgggtcgtcctgctactttttccggtaagtgcagaaa 44848010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 44896837 - 44896888
Alignment:
Q  27 tgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgc 78  Q
    |||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  44896837 tgggcgttctgttctttacatgggtcgttctgcaactttttccggtaagtgc 44896888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 44836069 - 44836114
Alignment:
Q  34 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 79  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  44836069 tctgttctttacatgggttgtcctgcaactttttccagtaagtgca 44836114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 44836166 - 44836252
Alignment:
Q  218 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgtt 307  Q
    ||||||||||||||||||||| || || | | ||||||||||||||| ||| || |||||   ||||||| ||||||||||||| |||||    
T  44836166 ttttctgctcatggaacaatacattactcatcttcaaagtcaataatcgtacctaacatc---taatgcacacacaacagaatagatgtt 44836252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 44896970 - 44897047
Alignment:
Q  117 aatacgtagctaatggccaattttgatttttcaaatagctgtgatatt-ttttatgtccctaaatcaactttatatgt 193  Q
    |||| ||||||| ||||| |||||||||||| |||||||| ||||||| ||   ||||||||||||| ||||||||||    
T  44896970 aataggtagctattggccgattttgatttttgaaatagctttgatattcttacctgtccctaaatcagctttatatgt 44897047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 499
Target Start/End: Complemental strand, 12927594 - 12927449
Alignment:
Q  354 atgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgatta 453  Q
    ||||||||| | || |||||| | ||||| |||||||| ||||| || ||||| |||||||||||||||||||| ||||| |||||||||||| | |||     
T  12927594 atgtaggttgtcctcacatcattagtttacgagaagcaacaaaatttgagaatcatgatgaaaatgcatggtctcggtgatgggccatattggattattt 12927495  T
Q  454 catatggttattttcttgcattatcagcgatctatatgttgtgttt 499  Q
    | ||  |||||||||||||  |||||   ||||| |||||||||||    
T  12927494 cttacagttattttcttgccatatcaattatctacatgttgtgttt 12927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 12927790 - 12927749
Alignment:
Q  38 ttctttacatgggtcgtcctgcaactttttcctgtaagtgca 79  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  12927790 ttctttacatgggtcatcttgcaactttttcctgtaagtgca 12927749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 22637871 - 22637916
Alignment:
Q  34 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 79  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  22637871 tctgttctttacatgggttgtcctgcaactttttccggtaagtgca 22637916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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