View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_30 (Length: 334)
Name: NF5190_low_30
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 40179072 - 40178755
Alignment:
| Q |
1 |
tcttgtggctttgactctttcactgcttttgggttcagcagtttctactggttgtgctccaactggtgtagttggagactcagcactaatttcactagct |
100 |
Q |
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| T |
40179072 |
tcttgtggctttgactctttcactgcttttgggttcagcagtttctactggttgtgctccaactggtgtagttggagactcagcactaatttcactagct |
40178973 |
T |
|
| Q |
101 |
ttctctgaatttggttcacacatctctgacattatgctaaactttgagaaatgagaatgaaagatgagatactttcattcattcatatagcnnnnnnntg |
200 |
Q |
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| T |
40178972 |
ttctctgaatttggttcacacatctctgacattatgctaaactttgagaaatgagaatgaaagatgagatactttcattcattcatatagcaaaaaaatg |
40178873 |
T |
|
| Q |
201 |
tgcttttactctaatgaatgaacttccaaagaaggattcaatatttttcgtgtaggtaacttcttttctacaactgattattgtccaaatatctttactc |
300 |
Q |
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| T |
40178872 |
tgcttttactctaatgaatgaacttccaaagaaggattcaatatttttcgtgtaggtaacttcttttctacaactgattattgtccaaatatctttactc |
40178773 |
T |
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| Q |
301 |
atttataaattttatatg |
318 |
Q |
| |
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| T |
40178772 |
atttataaattttatatg |
40178755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 6226411 - 6226477
Alignment:
| Q |
79 |
ctcagcactaatttcactagctttctctgaatttggttcacacatctctgacattatgctaaacttt |
145 |
Q |
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| T |
6226411 |
ctcagcactaatttcaccaactttctctgaatttggttcacacatttctgacattatgttaagcttt |
6226477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 6226478 - 6226565
Alignment:
| Q |
172 |
ctttcattcattcatatagcnnnnnnntgtgcttttactctaa-tgaatgaacttccaaagaaggattcaatatttttcgtgtaggta |
258 |
Q |
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||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
6226478 |
ctttcattcattcatatagtaaaaaaatgtgcttttacactaagtgaatgaactttcaaagaaggattcaataattttcgtgtaggta |
6226565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 1786637 - 1786699
Alignment:
| Q |
79 |
ctcagcactaatttcactagctttctctgaatttggttcacacatctctgacattatgctaaacttt |
145 |
Q |
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|||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||| |||||||| |
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| T |
1786637 |
ctcagcactaatttcact----ttctctgaaattggtccacacatctctgacgttatgttaaacttt |
1786699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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