View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_32 (Length: 323)
Name: NF5190_low_32
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_32 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 141 - 323
Target Start/End: Complemental strand, 44548406 - 44548224
Alignment:
| Q |
141 |
ataagaaagtaaggagaaaagcaagccgagattccaaaagagaggattgatatgttgtcattgaatgcctcatcctactatgtgccaagcttccttaaac |
240 |
Q |
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| T |
44548406 |
ataagaaagtaatgagaaaagcaagccgagattccaaaagagaggattgatatgttgtcattgaatgcctcatcctactatgtgccaaccttccttaaac |
44548307 |
T |
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| Q |
241 |
accctcattgagtatatcttgtgttagccttcttatacctctttccccttccaagctcttgaggctgagtttgtggagcagcc |
323 |
Q |
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| T |
44548306 |
accctcattgagtatatcttgtgttagccttcttatacctctttccccttccaagctcttgaggctgagtttgtggagcagcc |
44548224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 44548448 - 44548405
Alignment:
| Q |
18 |
agttgaatctcaacaattgtgataatactcttctctaattatat |
61 |
Q |
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| T |
44548448 |
agttgaacctcaacaattgtgataatactcttttctaattatat |
44548405 |
T |
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