View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5190_low_33 (Length: 310)

Name: NF5190_low_33
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5190_low_33
NF5190_low_33
[»] chr6 (12 HSPs)
chr6 (9-294)||(26800982-26801267)
chr6 (45-294)||(27614105-27614366)
chr6 (205-294)||(27692432-27692521)
chr6 (205-294)||(27707187-27707276)
chr6 (205-294)||(27594596-27594684)
chr6 (40-164)||(27707397-27707517)
chr6 (205-294)||(27533168-27533257)
chr6 (40-157)||(27692588-27692701)
chr6 (81-159)||(27726274-27726352)
chr6 (81-159)||(27533322-27533400)
chr6 (40-68)||(27533398-27533426)
chr6 (40-68)||(27726350-27726378)
[»] scaffold0349 (2 HSPs)
scaffold0349 (81-159)||(4853-4931)
scaffold0349 (40-68)||(4929-4957)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 26800982 - 26801267
Alignment:
Q  9 gataattcttagtccatattttagttgtttgcatggagttgatatggaaatggattcccagaaataacagcaccaatctagtccatccgatttaaatcca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26800982 gataattcttagtccatattttagttgtttgcatggagttgatatggaaatggattcccagaaataacagcaccaatctagtccatccgatttaaatcca 26801081  T
Q  109 tagctgagatggatggaaactaaattagtgaatctgtaatctgaaccatcctatcagagattaacaactgcgtaaaactgtggactttaaatgtatggaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801082 tagctgagatggatggaaactaaattagtgaatctgtaatctgaaccatcctatcagagattaacaactgcgtaaaactgtggactttaaatgtatggaa 26801181  T
Q  209 tccaggtccagtcgatactactactgttgaaagcacaacttaaagcaaatgcgagattcaaataatatgtcatttgatgatatttg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26801182 tccaggtccagtcgatactactactgttgaaagcacaacttaaagcaaatgcgagattcaaataatatgtcatttgatgatatttg 26801267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 27614366 - 27614105
Alignment:
Q  45 agttgatatggaaatggattcccagaaataacagcaccaatctagtccatccgatttaaatccatagctgagatggatggaaactaaattagtgaatctg 144  Q
    ||||||||||||||||||||||||  | |||  |||||| |||||||  |   ||||||||| | | ||||||||| || |||| ||||||||| || ||    
T  27614366 agttgatatggaaatggattcccactagtaattgcaccagtctagtctgttttatttaaatctacaactgagatggttgtaaaccaaattagtgtatatg 27614267  T
Q  145 taatctgaaccatcctatca---------gagattaacaactgcgtaaaactgtggactttaa---atgtatggaatccaggtccagtcgatactactac 232  Q
    |||| |||||| ||| ||||         ||||||||||||||| |  |||| |||||||| |   ||| | ||||||| ||||| |  ||||||||||     
T  27614266 taatttgaaccttccgatcacaaatgcctgagattaacaactgcatggaactatggacttttattaatgcacggaatccgggtcctgcggatactactag 27614167  T
Q  233 tgttgaaagcacaacttaaagcaaatgcgagattcaaataatatgtcatttgatgatatttg 294  Q
    ||||| |||||||| |||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  27614166 tgttggaagcacaagttaaagcaaatgtgagactcaattaacatgtcatttgatgatatttg 27614105  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 27692521 - 27692432
Alignment:
Q  205 ggaatccaggtccagtcgatactactactgttgaaagcacaacttaaagcaaatgcgagattcaaataatatgtcatttgatgatatttg 294  Q
    ||||||| ||||| || |||||||||||||||| |||||||| ||||| |||||| |||| |||| ||| ||||||||||||||||||||    
T  27692521 ggaatccgggtcctgttgatactactactgttggaagcacaagttaaatcaaatgtgagactcaattaacatgtcatttgatgatatttg 27692432  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 27707276 - 27707187
Alignment:
Q  205 ggaatccaggtccagtcgatactactactgttgaaagcacaacttaaagcaaatgcgagattcaaataatatgtcatttgatgatatttg 294  Q
    ||||||| ||||| || |||||||||||||||| |||||||| ||||| |||||| |||| |||| ||| ||||||||||||||||||||    
T  27707276 ggaatccgggtcctgttgatactactactgttggaagcacaagttaaatcaaatgtgagactcaattaacatgtcatttgatgatatttg 27707187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 27594684 - 27594596
Alignment:
Q  205 ggaatccaggtccagtcgatactactactgttgaaagcacaacttaaagcaaatgcgagattcaaataatatgtcatttgatgatatttg 294  Q
    ||||||| ||||| || |||||||||||||||| ||||| || |||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  27594684 ggaatccgggtcctgttgatactactactgttggaagca-aagttaaagcaaatgtgagactcaattaacatgtcatttgatgatatttg 27594596  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 27707517 - 27707397
Alignment:
Q  40 catggagttgatatggaaatggattcccagaaataacagcaccaatctagtccatccgatttaaatccatagctgagatggatggaaactaaattagtga 139  Q
    |||||||||||||||||||||||||||||| | |||| |||||||| |||    || |||||||||  |  | |||||||| || ||||  ||||||||     
T  27707517 catggagttgatatggaaatggattcccagtagtaactgcaccaatttag----tctgatttaaatatacggttgagatggttgaaaaccgaattagtgt 27707422  T
Q  140 atctgtaatctgaaccatcctatca 164  Q
    |||||||||||||||||||| ||||    
T  27707421 atctgtaatctgaaccatccgatca 27707397  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 27533257 - 27533168
Alignment:
Q  205 ggaatccaggtccagtcgatactactactgttgaaagcacaacttaaagcaaatgcgagattcaaataatatgtcatttgatgatatttg 294  Q
    ||||||| ||||| || |||||||||||||||| |||||||| ||||| |||||| |||| |||| ||| |||||  |||||||||||||    
T  27533257 ggaatccgggtcccgttgatactactactgttggaagcacaagttaaatcaaatgtgagactcaattaacatgtctattgatgatatttg 27533168  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 27692701 - 27692588
Alignment:
Q  40 catggagttgatatggaaatggattcccagaaataacagcaccaatctagtccatccgatttaaatccatagctgagatggatggaaactaaattagtga 139  Q
    |||||||||||||||||||||||||||||| | |||| |||||||| |||||     |||||||||| |  | |||||||| || ||||  |||| |||     
T  27692701 catggagttgatatggaaatggattcccagtagtaactgcaccaatttagtct----gatttaaatctacggttgagatggttgaaaaccgaattcgtgt 27692606  T
Q  140 atctgtaatctgaaccat 157  Q
    ||||||||||||||||||    
T  27692605 atctgtaatctgaaccat 27692588  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 27726352 - 27726274
Alignment:
Q  81 ccaatctagtccatccgatttaaatccatagctgagatggatggaaactaaattagtgaatctgtaatctgaaccatcc 159  Q
    |||||||||||  || |||||||||| || | |||||||| || ||||  |||||||| ||||||||||||||||||||    
T  27726352 ccaatctagtctgtctgatttaaatctatggttgagatggttgaaaaccgaattagtgtatctgtaatctgaaccatcc 27726274  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 27533400 - 27533322
Alignment:
Q  81 ccaatctagtccatccgatttaaatccatagctgagatggatggaaactaaattagtgaatctgtaatctgaaccatcc 159  Q
    |||||||||||  || |||||||||| |  | |||||||| || ||||  |||||||| ||||||||||||||||||||    
T  27533400 ccaatctagtctgtctgatttaaatctacggttgagatggttgaaaaccgaattagtgtatctgtaatctgaaccatcc 27533322  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 27533426 - 27533398
Alignment:
Q  40 catggagttgatatggaaatggattccca 68  Q
    |||||||||||||||||||||||||||||    
T  27533426 catggagttgatatggaaatggattccca 27533398  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 27726378 - 27726350
Alignment:
Q  40 catggagttgatatggaaatggattccca 68  Q
    |||||||||||||||||||||||||||||    
T  27726378 catggagttgatatggaaatggattccca 27726350  T

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Target: scaffold0349 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 4931 - 4853
Alignment:
Q  81 ccaatctagtccatccgatttaaatccatagctgagatggatggaaactaaattagtgaatctgtaatctgaaccatcc 159  Q
    |||||||||||  || |||||||||| || | |||||||| || ||||  |||||||| ||||||||||||||||||||    
T  4931 ccaatctagtctgtctgatttaaatctatggttgagatggttgaaaaccgaattagtgtatctgtaatctgaaccatcc 4853  T

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Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 4957 - 4929
Alignment:
Q  40 catggagttgatatggaaatggattccca 68  Q
    |||||||||||||||||||||||||||||    
T  4957 catggagttgatatggaaatggattccca 4929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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