View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_34 (Length: 302)
Name: NF5190_low_34
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 254
Target Start/End: Complemental strand, 3247831 - 3247629
Alignment:
| Q |
38 |
aattaagttgtgaagaatatatatgtacattgtaaggttcataatgtgcattgtaagtcatgactcaa--aatgaattactatttatatgtagaaatatt |
135 |
Q |
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| T |
3247831 |
aattaaattgtgaagaatatatatgtacattgtaaggttcataatgtgcaccgcaagtcatgactcaagtaatgaaatactatttataggta-------- |
3247740 |
T |
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| Q |
136 |
aggcgaaaaagaaaaacaaatgactaatttacctgttgcatcatttcctacttgttgtgaattaattctacaatattagcaaatttattaggatattgat |
235 |
Q |
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| T |
3247739 |
----gaaacagcaaaacaaatgactaatttacctgttgcatcatttgctac---atctaaattaattctacaatattagcaaaatta-taggatattggt |
3247648 |
T |
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| Q |
236 |
agggaatgaggaaaagata |
254 |
Q |
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| T |
3247647 |
agggaatgaagaaaagata |
3247629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 30824843 - 30824813
Alignment:
| Q |
224 |
taggatattgatagggaatgaggaaaagata |
254 |
Q |
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| T |
30824843 |
taggatattgatagggaatgaggaaaagata |
30824813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 30824716 - 30824683
Alignment:
| Q |
254 |
aataggtaaagtactagtgtattattatattttc |
287 |
Q |
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| T |
30824716 |
aataagtaaagtactagtgtattattatattttc |
30824683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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