View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_36 (Length: 300)
Name: NF5190_low_36
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 29362157 - 29362051
Alignment:
| Q |
18 |
cacagaaaaataggagatattagagaagacaaaaacgtggttaatggtgtcagaattcaatgtaatatactaataaagggaccatgaaacattgtacacg |
117 |
Q |
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| T |
29362157 |
cacagaaagataggagaatttagagaagacaaaaacgtggtgaatggtgtcagaattcaatgtaatatactaataaagggaccatgaaacattgtacacg |
29362058 |
T |
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| Q |
118 |
cgtacat |
124 |
Q |
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||||||| |
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| T |
29362057 |
cgtacat |
29362051 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 29362007 - 29361953
Alignment:
| Q |
165 |
cagactacgtaagagtaccgtgtgtgcttgaatcattctgtctgtgtctgctatg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29362007 |
cagactacgtaagagtaccgtgtgtgcttgaatcattctgtctgtgtctgctatg |
29361953 |
T |
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