View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5190_low_39 (Length: 282)

Name: NF5190_low_39
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5190_low_39
NF5190_low_39
[»] chr6 (4 HSPs)
chr6 (8-140)||(20416205-20416337)
chr6 (8-140)||(20418777-20418909)
chr6 (229-267)||(20418662-20418700)
chr6 (229-267)||(20417016-20417054)
[»] scaffold0146 (2 HSPs)
scaffold0146 (8-140)||(7513-7645)
scaffold0146 (229-267)||(8610-8648)
[»] chr3 (2 HSPs)
chr3 (27-140)||(16346490-16346603)
chr3 (229-267)||(16346375-16346413)
[»] scaffold0083 (2 HSPs)
scaffold0083 (8-140)||(34113-34247)
scaffold0083 (229-267)||(34324-34362)
[»] chr4 (1 HSPs)
chr4 (228-267)||(15018675-15018714)
[»] chr1 (1 HSPs)
chr1 (229-267)||(22063264-22063302)
[»] scaffold1778 (1 HSPs)
scaffold1778 (229-267)||(1250-1288)
[»] chr5 (1 HSPs)
chr5 (229-267)||(29950835-29950873)
[»] chr2 (2 HSPs)
chr2 (229-267)||(22299301-22299339)
chr2 (229-267)||(24807320-24807358)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 20416337 - 20416205
Alignment:
Q  8 gagaagaaagtgctctaaggattgaaagagggattgctgctatttttaaaacatttgaggaagagctctttcaacttcaaaatgaatataaaaagcgtgt 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||     
T  20416337 gagaagaaagcgctctaaggattgaaagagggattgctgctatttttaaaacatttgaggaagagctccttcaaattcaaaatgattataaaaagcgtga 20416238  T
Q  108 aagagatgttgaaaaaatagagggtctcattgt 140  Q
    ||||||| ||||||||||||||| |||||||||    
T  20416237 aagagatcttgaaaaaatagaggatctcattgt 20416205  T

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Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 20418909 - 20418777
Alignment:
Q  8 gagaagaaagtgctctaaggattgaaagagggattgctgctatttttaaaacatttgaggaagagctctttcaacttcaaaatgaatataaaaagcgtgt 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||     
T  20418909 gagaagaaagcgctctaaggattgaaagagggattgctgctatttttaaaacatttgaggaagagctccttcaaattccaaatgattataaaaagcgtga 20418810  T
Q  108 aagagatgttgaaaaaatagagggtctcattgt 140  Q
    ||||||||||||||||||||||| |||||||||    
T  20418809 aagagatgttgaaaaaatagaggatctcattgt 20418777  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 20418700 - 20418662
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20418700 aatgttgggaagttttggcctactattacactagtacct 20418662  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 20417016 - 20417054
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  20417016 aatgttgggatgttttggcctactattacattagtacct 20417054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 7513 - 7645
Alignment:
Q  8 gagaagaaagtgctctaaggattgaaagagggattgctgctatttttaaaacatttgaggaagagctctttcaacttcaaaatgaatataaaaagcgtgt 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||     
T  7513 gagaagaaagcgctctaaggattgaaagagggattgctgctatttttaaaacatttgaggaagagctcattcaaattcaaaatgattataaaaagcgtga 7612  T
Q  108 aagagatgttgaaaaaatagagggtctcattgt 140  Q
    ||||||||||| ||||||| ||| |||||||||    
T  7613 aagagatgttggaaaaataaaggatctcattgt 7645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 8610 - 8648
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  8610 aatgttgagaagttttggcctactattacactagtacct 8648  T

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Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 16346603 - 16346490
Alignment:
Q  27 gattgaaagagggattgctgctatttttaaaacatttgaggaagagctctttcaacttcaaaatgaatataaaaagcgtgtaagagatgttgaaaaaata 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||||    
T  16346603 gattgaaagagggattgctgctatttttaaaacatttgaggaagagctccttcaaattcaaaatgattataaaaagcgtgaaagagatgttgaaaaaata 16346504  T
Q  127 gagggtctcattgt 140  Q
    |||| |||||||||    
T  16346503 gaggatctcattgt 16346490  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 16346413 - 16346375
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16346413 aatgttgggaagttttggcctactattacactagtacct 16346375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 34113 - 34247
Alignment:
Q  8 gagaagaaagtgctctaaggattgaaagagggattgctgctatttttaaaacatttgaggaagagctctttcaacttcaaaatgaatataaaaagcgtgt 107  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||     
T  34113 gagaagaaagctctctaaggattgaaagaggaattgctgctatttttaaaacatttgaggaagagctccttcaaattcaaaatgattataaaaagcgtga 34212  T
Q  108 aagagatgttg--aaaaaatagagggtctcattgt 140  Q
    |||||||||||  |||||||||||| |||||||||    
T  34213 aagagatgttggaaaaaaatagaggatctcattgt 34247  T

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Target: scaffold0083; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 34324 - 34362
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  34324 aatgttgtgaagttttggcctactattacactagtacct 34362  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 15018714 - 15018675
Alignment:
Q  228 taatgttgggaagttttggcctactattacactagtacct 267  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15018714 taatgttgggaagttttggcctactattacactagtacct 15018675  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 22063302 - 22063264
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  22063302 aatgttgggaagttttggcctactattacattagtacct 22063264  T

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Target: scaffold1778 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 1250 - 1288
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  1250 aatgttgagaagttttggcctactattacattagtacct 1288  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 29950835 - 29950873
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  29950835 aatgttaggaagttttggcctactattacattagtacct 29950873  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 22299301 - 22299339
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  22299301 aatgttgagaagttttggcctactattacattagtacct 22299339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 24807358 - 24807320
Alignment:
Q  229 aatgttgggaagttttggcctactattacactagtacct 267  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  24807358 aatgttgagaagttttggcctactattacattagtacct 24807320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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