View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5190_low_41 (Length: 271)
Name: NF5190_low_41
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 18940565 - 18940377
Alignment:
| Q |
7 |
tccaagaatatagttttaatctcatgannnnnnnctcaagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagtt |
106 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18940565 |
tccaataatatagttttaatctcatgatttttttctcaagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagtt |
18940466 |
T |
|
| Q |
107 |
ctttcgccgagattcgtgccgaaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgttattggtctccttgattcttc |
195 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18940465 |
ctttcgccgagattcgtgctaaaagtctcgaaggttcttcgatcctaaaatgttcccatgatgagtgttattggtctccttgattcttc |
18940377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 19897651 - 19897753
Alignment:
| Q |
43 |
caagaatgtaatataagtcatgaagctagataactcagttgaaaaagaaccgaaggatgaagttctttcgccgagattcgtgccgaaagtctcgaaggtt |
142 |
Q |
| |
|
|||||||||||| ||||| |||||||| || ||| || ||||||||||| | |||||| ||||| | |||||| ||| |||| ||||||||| |||||| |
|
|
| T |
19897651 |
caagaatgtaatgtaagttatgaagctcgagaacccaattgaaaaagaatcaaaggataaagttttaccgccgaaatttgtgctgaaagtctcaaaggtt |
19897750 |
T |
|
| Q |
143 |
ctt |
145 |
Q |
| |
|
||| |
|
|
| T |
19897751 |
ctt |
19897753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University