View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5190_low_42 (Length: 258)
Name: NF5190_low_42
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_42 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 40179399 - 40179152
Alignment:
| Q |
11 |
cacagaatcaaagaaaccaggcaatttgttttctttcctcacatcatttctcattatccaaaaagactcagactcatcctttatatttgactcccatttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179399 |
cacagaatcaaagaaaccaggcaatttgttttctttcctcacatcatttctcattatccaaaaagactcagactcatcctttatatttgactcccatttc |
40179300 |
T |
|
| Q |
111 |
ttgatcttcctgaaatcagtcagaagatttccccaccttttcctgcactgaacagctcctcttttgacaccatgttgctgacacaatgatgaaaccatat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40179299 |
ttgatcttcctgaaatcagtcagaagatttccccaccttttcctgcactgaacagctcctcttttgacaccatgttgctgacacaatgatgaaaccaaat |
40179200 |
T |
|
| Q |
211 |
cccatttcgggtcggtttgaacaagccctgatgttgatgatctgtatc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40179199 |
cccatttcgggtcggtttgaacaagccctgatgttgatgatctgtatc |
40179152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University