View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_43 (Length: 251)
Name: NF5190_low_43
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_43 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 15148327 - 15148565
Alignment:
| Q |
13 |
aatatggtgcaatcggtcttactcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaag |
112 |
Q |
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| T |
15148327 |
aatatggtgcaatcggtcttactcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaag |
15148426 |
T |
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| Q |
113 |
atatttttaagagttaccgcatccttaagtaatgattttttatgacgtaggaaagattatgaactagggattgttcattgtaatgatgaacaacatgact |
212 |
Q |
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| T |
15148427 |
atatttttaagagttaccacatccttaagtaatgattttttatgacgtaggaaagattatgaactagggattgttcattgtaatgatgaacaacatgact |
15148526 |
T |
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| Q |
213 |
acaagacgttttaattaattgcatattttcagaactaaa |
251 |
Q |
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| T |
15148527 |
acaagacgttttaattaattgcatattttcagaactaaa |
15148565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 43471332 - 43471164
Alignment:
| Q |
35 |
tcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaagatatttttaagagttaccgcat |
134 |
Q |
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| T |
43471332 |
tcttaccaacatagaaaccatgataatagtgagttatgttggtaagacacatcatttgttcttgcaagaggacaaataatatttttaagagttacctctt |
43471233 |
T |
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| Q |
135 |
ccttaagtaatgattttttatgacgtaggaaagattatgaactagggattgttcattgtaatgatgaac |
203 |
Q |
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| T |
43471232 |
ccttagacaatgatttttcatagcattaaaaaaattatgaactaggaattgttcatcgtaatgatgaac |
43471164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 48443816 - 48443977
Alignment:
| Q |
35 |
tcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaagatatttttaagagttaccgcat |
134 |
Q |
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| T |
48443816 |
tcttacgaacatagaaatcatgagaataacgagttatgttggtaaggcaaactctttgttcttgcaagatgataaaagatatttttaagagttacctcat |
48443915 |
T |
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| Q |
135 |
ccttaagtaatgattttttatgacgt-aggaaagattatgaactagggattgttcattgtaat |
196 |
Q |
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| T |
48443916 |
ccttaggcaataattttacataacataagaaaagattatgaacta-ggattattcattgtaat |
48443977 |
T |
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