View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_47 (Length: 246)
Name: NF5190_low_47
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 29037188 - 29037420
Alignment:
| Q |
1 |
tcaatggaaacccaacacaaacctgtccaaaggatcattccccaattcaagcatttcatcaaaatcaagatccatcatcatctacatcaacatgtccaga |
100 |
Q |
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| T |
29037188 |
tcaatggaaacccaacacaaacctgtccaaacgatcattccccaattcaagcatttcatcaagatcaagatccatcatcatctacatcaacatgtccaga |
29037287 |
T |
|
| Q |
101 |
acacttcagatggattcatgaagatttggaaccatggaagagtacaggaatcacaagggaaatggtggatagtggagaaaacatttcacagcttagaatt |
200 |
Q |
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| T |
29037288 |
acacttcagatggattcatgaagatttggaaccatggaagagtacaggaatcacaagggaaatggtggatagtggagaaaacatttcacagcttagaatt |
29037387 |
T |
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| Q |
201 |
gtgattaaacaaggaaaagtttatgtagaaact |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29037388 |
gtgattaaacaaggaaaagtttatgtagaaact |
29037420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 29017352 - 29017555
Alignment:
| Q |
29 |
aaaggatcattccccaattcaagcatttcatcaaaatcaagatccatcatcatctacatcaacatgtccagaacacttcagatggattcatgaagatttg |
128 |
Q |
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| T |
29017352 |
aaaggatcatcatccaattcaagcatttcatcaagatcaagatccatcatcatctacatcaacatgtccagagcactttagatggattcatgaagatttg |
29017451 |
T |
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| Q |
129 |
gaaccatggaagagtacaggaatcacaagggaaatggtggatagtggagaaaacatttcacagcttagaattgtgattaaacaaggaaaagtttatgtag |
228 |
Q |
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| T |
29017452 |
gaaccatggaagagtacaggaatcacaagggaaacggtggaaagtggaaaaaatatttcacagcttagaattgtgattaaaaaaggaaaagcttatgtag |
29017551 |
T |
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| Q |
229 |
aaac |
232 |
Q |
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|||| |
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| T |
29017552 |
aaac |
29017555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 11716376 - 11716289
Alignment:
| Q |
103 |
acttcagatggattcatgaagatttggaaccatggaagagtacaggaatcacaagggaaatggtggatagtggagaaaacatttcaca |
190 |
Q |
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|||||| |||||| ||||||||| | | |||||| ||| |||||||||||||| |||||||| || |||||| ||||||| ||||| |
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| T |
11716376 |
acttcaaatggatccatgaagatcttaagccatgggagaaaacaggaatcacaagagaaatggttgaaagtggaaaaaacatgtcaca |
11716289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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