View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_48 (Length: 245)
Name: NF5190_low_48
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 48166816 - 48166607
Alignment:
| Q |
18 |
agtttatttatgacagtctacaccattattagtggtgtatatttttcgtcnnnnnnnntcgtgaaatagactattaaacggacttaccaaaaagtcaggt |
117 |
Q |
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| T |
48166816 |
agtttatttatgacaatctacaccattattagtggtgtatatttttcgtcaaaaaaaatcgtgaaatagactattaaacggacttaccaaaaagtcaggt |
48166717 |
T |
|
| Q |
118 |
caaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagcaagtcatgttcagcctagcaaagtttaacctagtct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48166716 |
caaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagtaagtcatgttcagcctagcaaagtttaacctagtct |
48166617 |
T |
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| Q |
218 |
attttcacct |
227 |
Q |
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|||||||||| |
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| T |
48166616 |
attttcacct |
48166607 |
T |
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